Difference between revisions of "TSS:Hg 190000.1"
From referenceTSS
| Line 8: | Line 8: | ||
|PN-II= | |PN-II= | ||
|PN2= | |PN2= | ||
| − | |all_trans=ENST00000359726.7:-23 NM_001136131:-23 | + | |all_trans=LF210650:0 MA446227:0 ENST00000359726.7:-23 NM_001136131:-23 LF385472:-23 MA621049:-23 AK296229:-23 LF212681:-214 MA448258:-214 LF385141:229 MA620718:229 ENST00000357903.7:262 ENST00000346798.8:279 NM_001136129:279 NM_000484:279 NM_201414:279 NM_201413:279 NM_001204302:279 NM_001204301:279 NM_001204303:279 NM_001136130:279 NM_001385253:279 M35675:279 ENST00000348990.9:282 Y00264:282 AK297412:282 AK294534:282 AK298861:282 LF214042:283 MA449619:283 BC065529:298 BC065523:298 ENST00000354192.7:302 AF282245:302 ENST00000474136.5:303 BC004369:303 X06989:311 MA353526:343 AK297229:365 AK312326:365 ENST00000358918.7:382 ENST00000439274.6:395 HM005315:409 AB384791:424 EU832797:429 GQ129348:429 KJ901289:429 |
|chr=chr21 | |chr=chr21 | ||
|cpg_percent=0.065 | |cpg_percent=0.065 | ||
| − | |distance= | + | |distance=0 |
|distance_to_tss=51 | |distance_to_tss=51 | ||
|end=26171105 | |end=26171105 | ||
| Line 17: | Line 17: | ||
|entrez_id=351 | |entrez_id=351 | ||
|gc_percent=0.631841 | |gc_percent=0.631841 | ||
| − | |gene_alias=AAA | + | |gene_alias=AAA{{!}}ABETA{{!}}ABPP{{!}}AD1{{!}}APPI{{!}}CTFgamma{{!}}CVAP{{!}}PN-II{{!}}PN2{{!}}preA4 |
|gene_description=amyloid beta precursor protein | |gene_description=amyloid beta precursor protein | ||
|gene_id=351 | |gene_id=351 | ||
| − | |gene_name= | + | |gene_name=APP |
|gene_source=HGNC:620 | |gene_source=HGNC:620 | ||
|gene_symbol=APP | |gene_symbol=APP | ||
| Line 30: | Line 30: | ||
|nearest_refseq=NM_000484 | |nearest_refseq=NM_000484 | ||
|nearest_unigene=Hs.434980 | |nearest_unigene=Hs.434980 | ||
| − | |num_trans= | + | |num_trans=47 |
|species=human | |species=human | ||
|start=26171048 | |start=26171048 | ||
|start_of_center_position=26171076 | |start_of_center_position=26171076 | ||
|strand=- | |strand=- | ||
| − | |transcript_name= | + | |transcript_name=LF210650 MA446227 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_190000.1 | |tss_id=hg_190000.1 | ||
Latest revision as of 02:49, 17 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 26171076 |
|---|---|
| End of the center position in the TSS region: | 26171077 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | LF210650 MA446227 |
|---|---|
| Distance: | 0 |
| Num_trans: | 47 |
| All_trans: | LF210650:0 MA446227:0 ENST00000359726.7:-23 NM_001136131:-23 LF385472:-23 MA621049:-23 AK296229:-23 LF212681:-214 MA448258:-214 LF385141:229 MA620718:229 ENST00000357903.7:262 ENST00000346798.8:279 NM_001136129:279 NM_000484:279 NM_201414:279 NM_201413:279 NM_001204302:279 NM_001204301:279 NM_001204303:279 NM_001136130:279 NM_001385253:279 M35675:279 ENST00000348990.9:282 Y00264:282 AK297412:282 AK294534:282 AK298861:282 LF214042:283 MA449619:283 BC065529:298 BC065523:298 ENST00000354192.7:302 AF282245:302 ENST00000474136.5:303 BC004369:303 X06989:311 MA353526:343 AK297229:365 AK312326:365 ENST00000358918.7:382 ENST00000439274.6:395 HM005315:409 AB384791:424 EU832797:429 GQ129348:429 KJ901289:429 |
TATA-Box annotation
| Distance to TSS: | 51 |
|---|---|
| Nearest PromoterID: | NM_001136131 |
| Entrez ID: | 351 |
| Nearest Unigene: | Hs.434980 |
| Nearest Refseq: | NM_000484 |
| Nearest Ensembl: | ENSG00000142192 |
| Gene Name: | APP |
| Gene Alias: | AAA|ABETA|ABPP|AD1|APPI|CTFgamma|CVAP|PN-II|PN2|preA4 |
| Gene Description: | amyloid beta precursor protein |
| Gene Type: | protein-coding |
| CpG%: | 0.065 |
| GC%: | 0.631841 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
