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Difference between revisions of "TSS:Hg 194860.1"

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{{TSSDetail
 
{{TSSDetail
|all_trans=AF275801:0 S75895:236 S75896:261 uc064xoy.1:474
+
|all_trans=AF275801:0 S75895:236 S75896:261
 
|chr=chrM
 
|chr=chrM
 
|cpg_percent=0.015
 
|cpg_percent=0.015
 
|distance=0
 
|distance=0
|distance_to_tss=3362
+
|distance_to_tss=2481
 
|end=5038
 
|end=5038
 
|end_of_center_position=5033
 
|end_of_center_position=5033
|entrez_id=
+
|entrez_id=113219467
 
|gc_percent=0.368159
 
|gc_percent=0.368159
|gene_alias=
+
|gene_alias=-
|gene_description=
+
|gene_description=microRNA 12136
|gene_name=
+
|gene_id=100652939
|gene_type=
+
|gene_name=MT-ND2 pseudogene 28
 +
|gene_source=HGNC:42129
 +
|gene_symbol=MTND2P28
 +
|gene_synonyms=
 +
|gene_type=ncRNA
 +
|hgnc_mgi_id=HGNC:42129
 
|nearest_ensembl=
 
|nearest_ensembl=
|nearest_promoter_id=NR_137295
+
|nearest_promoter_id=NR_162149
|nearest_refseq=
+
|nearest_refseq=NR_162149
 
|nearest_unigene=
 
|nearest_unigene=
|num_trans=4
+
|num_trans=3
 
|species=human
 
|species=human
 
|start=5027
 
|start=5027
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|tss_id=hg_194860.1
 
|tss_id=hg_194860.1
 
|tss_score=1
 
|tss_score=1
 +
|uniprot_id=
 
}}
 
}}

Latest revision as of 04:41, 17 June 2021

Basic information about the TSS


TSS ID:hg_194860.1
Species:human
Chr:chrM
TSS Classification:yes
Start:5027
End:5038
Strand:+
TSS Score:1
Start of the center position in the TSS region:5032
End of the center position in the TSS region:5033



Gene and protein annotation


Transcript_name:AF275801
Distance:0
GeneID:100652939
HGNC/MGI_ID:HGNC:42129
UniProt_ID:
Gene_name:MT-ND2 pseudogene 28
Gene_symbol:MTND2P28
Gene_synonyms:
Gene_source:HGNC:42129



Transcript annotation


Transcript_name:AF275801
Distance:0
Num_trans:3
All_trans:AF275801:0 S75895:236 S75896:261



TATA-Box annotation


Distance to TSS:2481
Nearest PromoterID:NR_162149
Entrez ID:113219467
Nearest Unigene:
Nearest Refseq:NR_162149
Nearest Ensembl:
Gene Name:MT-ND2 pseudogene 28
Gene Alias:-
Gene Description:microRNA 12136
Gene Type:ncRNA
CpG%:0.015
GC%:0.368159
TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation):