Difference between revisions of "TSS:Hg 196292.1"
From referenceTSS
| Line 3: | Line 3: | ||
|JM21= | |JM21= | ||
|PPP1R90= | |PPP1R90= | ||
| − | |all_trans=ENST00000423941.5:0 ENST00000438518.5:0 | + | |all_trans=ENST00000423941.5:0 ENST00000438518.5:0 NM_001321225:0 ENST00000376643.6:289 ENST00000469223.5:382 AK302926:469 |
|chr=chrX | |chr=chrX | ||
|cpg_percent=0.105 | |cpg_percent=0.105 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss= | + | |distance_to_tss=-7 |
|end=48801411 | |end=48801411 | ||
|end_of_center_position=48801392 | |end_of_center_position=48801392 | ||
|entrez_id=10013 | |entrez_id=10013 | ||
|gc_percent=0.631841 | |gc_percent=0.631841 | ||
| − | |gene_alias=CPBHM | + | |gene_alias=CPBHM{{!}}HD6{{!}}JM21{{!}}PPP1R90 |
|gene_description=histone deacetylase 6 | |gene_description=histone deacetylase 6 | ||
|gene_id=10013 | |gene_id=10013 | ||
| Line 25: | Line 25: | ||
|nearest_refseq=NM_006044 | |nearest_refseq=NM_006044 | ||
|nearest_unigene=Hs.6764 | |nearest_unigene=Hs.6764 | ||
| − | |num_trans= | + | |num_trans=6 |
|species=human | |species=human | ||
|start=48801371 | |start=48801371 | ||
|start_of_center_position=48801391 | |start_of_center_position=48801391 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name=ENST00000423941.5 ENST00000438518.5 | + | |transcript_name=ENST00000423941.5 ENST00000438518.5 NM_001321225 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_196292.1 | |tss_id=hg_196292.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id=C9J172 C9JEF4 | + | |uniprot_id=C9J172 C9JEF4 Q9NSW6 |
}} | }} | ||
Revision as of 05:14, 17 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 48801391 |
|---|---|
| End of the center position in the TSS region: | 48801392 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000423941.5 ENST00000438518.5 NM_001321225 |
|---|---|
| Distance: | 0 |
| Num_trans: | 6 |
| All_trans: | ENST00000423941.5:0 ENST00000438518.5:0 NM_001321225:0 ENST00000376643.6:289 ENST00000469223.5:382 AK302926:469 |
TATA-Box annotation
| Distance to TSS: | -7 |
|---|---|
| Nearest PromoterID: | NM_001321225 |
| Entrez ID: | 10013 |
| Nearest Unigene: | Hs.6764 |
| Nearest Refseq: | NM_006044 |
| Nearest Ensembl: | ENSG00000094631 |
| Gene Name: | histone deacetylase 6 |
| Gene Alias: | CPBHM|HD6|JM21|PPP1R90 |
| Gene Description: | histone deacetylase 6 |
| Gene Type: | protein-coding |
| CpG%: | 0.105 |
| GC%: | 0.631841 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
