Difference between revisions of "TSS:Hg 2030.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
|DYT2= | |DYT2= | ||
| − | |all_trans= | + | |all_trans=ENST00000459874.5:28 DQ426877:48 ENST00000373467.4:57 NM_002143:57 AK313907:59 BC001777:63 ENST00000480118.5:-342 ENST00000470166.5:-430 |
|chr=chr1 | |chr=chr1 | ||
|cpg_percent=0.125 | |cpg_percent=0.125 | ||
| − | |distance= | + | |distance=28 |
| − | |distance_to_tss=- | + | |distance_to_tss=-62 |
|end=32886434 | |end=32886434 | ||
|end_of_center_position=32886429 | |end_of_center_position=32886429 | ||
|entrez_id=3208 | |entrez_id=3208 | ||
|gc_percent=0.81592 | |gc_percent=0.81592 | ||
| − | |gene_alias=BDR2 | + | |gene_alias=BDR2{{!}}DYT2 |
|gene_description=hippocalcin | |gene_description=hippocalcin | ||
|gene_id=3208 | |gene_id=3208 | ||
| Line 23: | Line 23: | ||
|nearest_refseq=NM_002143 | |nearest_refseq=NM_002143 | ||
|nearest_unigene=Hs.632391 | |nearest_unigene=Hs.632391 | ||
| − | |num_trans= | + | |num_trans=8 |
|species=human | |species=human | ||
|start=32886423 | |start=32886423 | ||
|start_of_center_position=32886428 | |start_of_center_position=32886428 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name=ENST00000459874.5 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_2030.1 | |tss_id=hg_2030.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id= |
}} | }} | ||
Revision as of 07:12, 17 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 32886428 |
|---|---|
| End of the center position in the TSS region: | 32886429 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000459874.5 |
|---|---|
| Distance: | 28 |
| Num_trans: | 8 |
| All_trans: | ENST00000459874.5:28 DQ426877:48 ENST00000373467.4:57 NM_002143:57 AK313907:59 BC001777:63 ENST00000480118.5:-342 ENST00000470166.5:-430 |
TATA-Box annotation
| Distance to TSS: | -62 |
|---|---|
| Nearest PromoterID: | NM_002143 |
| Entrez ID: | 3208 |
| Nearest Unigene: | Hs.632391 |
| Nearest Refseq: | NM_002143 |
| Nearest Ensembl: | ENSG00000121905 |
| Gene Name: | hippocalcin |
| Gene Alias: | BDR2|DYT2 |
| Gene Description: | hippocalcin |
| Gene Type: | protein-coding |
| CpG%: | 0.125 |
| GC%: | 0.81592 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
