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Difference between revisions of "TSS:Hg 219715.1"

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{{TSSDetail
 
{{TSSDetail
|all_trans=BX641030:54 AK092247:355
+
|all_trans=LF355481:-16 MA591058:-16 BX641030:54 AK092247:355
 
|chr=chr9
 
|chr=chr9
 
|cpg_percent=0.025
 
|cpg_percent=0.025
|distance=54
+
|distance=-16
 
|distance_to_tss=-161105
 
|distance_to_tss=-161105
 
|end=16437418
 
|end=16437418
Line 12: Line 12:
 
|gene_description=chromosome 9 open reading frame 92
 
|gene_description=chromosome 9 open reading frame 92
 
|gene_id=54796
 
|gene_id=54796
|gene_name=basonuclin 2
+
|gene_name=C9orf92
 
|gene_source=HGNC:30988
 
|gene_source=HGNC:30988
 
|gene_symbol=BNC2
 
|gene_symbol=BNC2
Line 19: Line 19:
 
|hgnc_mgi_id=HGNC:30988
 
|hgnc_mgi_id=HGNC:30988
 
|nearest_ensembl=ENSG00000205549
 
|nearest_ensembl=ENSG00000205549
|nearest_promoter_id=NR_073471
+
|nearest_promoter_id=NM_001364979
 
|nearest_refseq=NM_001271829
 
|nearest_refseq=NM_001271829
 
|nearest_unigene=Hs.586441
 
|nearest_unigene=Hs.586441
|num_trans=2
+
|num_trans=4
 
|species=human
 
|species=human
 
|start=16437417
 
|start=16437417
 
|start_of_center_position=16437417
 
|start_of_center_position=16437417
 
|strand=-
 
|strand=-
|transcript_name=BX641030
+
|transcript_name=LF355481 MA591058
 
|tss_classification=no
 
|tss_classification=no
 
|tss_id=hg_219715.1
 
|tss_id=hg_219715.1

Latest revision as of 08:16, 17 June 2021

Basic information about the TSS


TSS ID:hg_219715.1
Species:human
Chr:chr9
TSS Classification:no
Start:16437417
End:16437418
Strand:-
TSS Score:1
Start of the center position in the TSS region:16437417
End of the center position in the TSS region:16437418



Gene and protein annotation


Transcript_name:LF355481 MA591058
Distance:-16
GeneID:54796
HGNC/MGI_ID:HGNC:30988
UniProt_ID:
Gene_name:C9orf92
Gene_symbol:BNC2
Gene_synonyms:BSN2 FLJ20043
Gene_source:HGNC:30988



Transcript annotation


Transcript_name:LF355481 MA591058
Distance:-16
Num_trans:4
All_trans:LF355481:-16 MA591058:-16 BX641030:54 AK092247:355



TATA-Box annotation


Distance to TSS:-161105
Nearest PromoterID:NM_001364979
Entrez ID:100129385
Nearest Unigene:Hs.586441
Nearest Refseq:NM_001271829
Nearest Ensembl:ENSG00000205549
Gene Name:C9orf92
Gene Alias:Em:AL513424.1
Gene Description:chromosome 9 open reading frame 92
Gene Type:protein-coding
CpG%:0.025
GC%:0.497512
TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation):