Difference between revisions of "TSS:Hg 220150.1"
From referenceTSS
| Line 2: | Line 2: | ||
|PLCE= | |PLCE= | ||
|PPLC= | |PPLC= | ||
| − | |all_trans= | + | |all_trans=AF190642:8 LF214062:169 MA449639:169 BC140705:183 BC144286:183 AB384613:243 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.005 | |cpg_percent=0.005 | ||
|distance=8 | |distance=8 | ||
| − | |distance_to_tss= | + | |distance_to_tss=36873 |
|end=94030804 | |end=94030804 | ||
|end_of_center_position=94030804 | |end_of_center_position=94030804 | ||
|entrez_id=51196 | |entrez_id=51196 | ||
|gc_percent=0.328358 | |gc_percent=0.328358 | ||
| − | |gene_alias=NPHS3 | + | |gene_alias=NPHS3{{!}}PLCE{{!}}PPLC |
|gene_description=phospholipase C epsilon 1 | |gene_description=phospholipase C epsilon 1 | ||
|gene_id=51196 | |gene_id=51196 | ||
| Line 21: | Line 21: | ||
|hgnc_mgi_id=HGNC:17175 | |hgnc_mgi_id=HGNC:17175 | ||
|nearest_ensembl=ENSG00000138193 | |nearest_ensembl=ENSG00000138193 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_016341 |
|nearest_refseq=NM_016341 | |nearest_refseq=NM_016341 | ||
|nearest_unigene=Hs.655033 | |nearest_unigene=Hs.655033 | ||
| Line 29: | Line 29: | ||
|start_of_center_position=94030803 | |start_of_center_position=94030803 | ||
|strand=+ | |strand=+ | ||
| − | |tata_box= | + | |tata_box=83(GCCTCTTAATGC,-,0.00) |
| − | |transcript_name= | + | |transcript_name=AF190642 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_220150.1 | |tss_id=hg_220150.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id= |
}} | }} | ||
Revision as of 08:22, 17 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 94030803 |
|---|---|
| End of the center position in the TSS region: | 94030804 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | AF190642 |
|---|---|
| Distance: | 8 |
| Num_trans: | 6 |
| All_trans: | AF190642:8 LF214062:169 MA449639:169 BC140705:183 BC144286:183 AB384613:243 |
TATA-Box annotation
| Distance to TSS: | 36873 |
|---|---|
| Nearest PromoterID: | NM_016341 |
| Entrez ID: | 51196 |
| Nearest Unigene: | Hs.655033 |
| Nearest Refseq: | NM_016341 |
| Nearest Ensembl: | ENSG00000138193 |
| Gene Name: | phospholipase C epsilon 1 |
| Gene Alias: | NPHS3|PLCE|PPLC |
| Gene Description: | phospholipase C epsilon 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.005 |
| GC%: | 0.328358 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | 83(GCCTCTTAATGC,-,0.00) |
