Difference between revisions of "TSS:Hg 220985.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
|Z18= | |Z18= | ||
| − | |all_trans=ENST00000466550.1:14 ENST00000483765.5 | + | |all_trans=ENST00000466550.1:14 ENST00000483765.5:14 ENST00000493317.1:-46 |
|chr=chr13 | |chr=chr13 | ||
|cpg_percent=0.025 | |cpg_percent=0.025 | ||
| Line 10: | Line 10: | ||
|entrez_id=26771 | |entrez_id=26771 | ||
|gc_percent=0.412935 | |gc_percent=0.412935 | ||
| − | |gene_alias=RNU102 | + | |gene_alias=RNU102{{!}}Z18 |
| − | |gene_description= | + | |gene_description=small nucleolar RNA, C/D box 102 |
|gene_id=6144 | |gene_id=6144 | ||
|gene_name=ribosomal protein L21 | |gene_name=ribosomal protein L21 | ||
| Line 23: | Line 23: | ||
|nearest_refseq=NR_002574 | |nearest_refseq=NR_002574 | ||
|nearest_unigene= | |nearest_unigene= | ||
| − | |num_trans= | + | |num_trans=3 |
|species=human | |species=human | ||
|start=27253750 | |start=27253750 | ||
|start_of_center_position=27253750 | |start_of_center_position=27253750 | ||
|strand=+ | |strand=+ | ||
| − | |tata_box= | + | |tata_box=77(CCTTTTAGAAAA,+,0.00) |
| − | |transcript_name=ENST00000466550.1 ENST00000483765.5 | + | |transcript_name=ENST00000466550.1 ENST00000483765.5 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_220985.1 | |tss_id=hg_220985.1 | ||
Revision as of 08:31, 17 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 27253750 |
|---|---|
| End of the center position in the TSS region: | 27253751 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000466550.1 ENST00000483765.5 |
|---|---|
| Distance: | 14 |
| Num_trans: | 3 |
| All_trans: | ENST00000466550.1:14 ENST00000483765.5:14 ENST00000493317.1:-46 |
TATA-Box annotation
| Distance to TSS: | -1313 |
|---|---|
| Nearest PromoterID: | NR_002574 |
| Entrez ID: | 26771 |
| Nearest Unigene: | |
| Nearest Refseq: | NR_002574 |
| Nearest Ensembl: | ENSG00000207500 |
| Gene Name: | ribosomal protein L21 |
| Gene Alias: | RNU102|Z18 |
| Gene Description: | small nucleolar RNA, C/D box 102 |
| Gene Type: | snoRNA |
| CpG%: | 0.025 |
| GC%: | 0.412935 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | 77(CCTTTTAGAAAA,+,0.00) |
