Difference between revisions of "TSS:Hg 221293.1"
From referenceTSS
| Line 9: | Line 9: | ||
|TF3B90= | |TF3B90= | ||
|TFIIIB90= | |TFIIIB90= | ||
| − | |all_trans=ENST00000446501.6:136 NM_001242789 | + | |all_trans=ENST00000446501.6:136 NM_001242789:136 AK096471:136 ENST00000552127.5:148 LF330691:-164 MA566268:-164 |
|chr=chr14 | |chr=chr14 | ||
|cpg_percent=0.055 | |cpg_percent=0.055 | ||
| Line 18: | Line 18: | ||
|entrez_id=2972 | |entrez_id=2972 | ||
|gc_percent=0.646766 | |gc_percent=0.646766 | ||
| − | |gene_alias=BRF | + | |gene_alias=BRF{{!}}BRF-1{{!}}CFDS{{!}}GTF3B{{!}}HEL-S-76p{{!}}TAF3B2{{!}}TAF3C{{!}}TAFIII90{{!}}TF3B90{{!}}TFIIIB90{{!}}hBRF |
| − | |gene_description= | + | |gene_description=BRF1 RNA polymerase III transcription initiation factor subunit |
|gene_id=2972 | |gene_id=2972 | ||
| − | |gene_name= | + | |gene_name=BRF1 RNA polymerase III transcription initiation factor subunit; ZFP36 ring finger protein like 1 |
|gene_source=HGNC:1107 HGNC:11551 | |gene_source=HGNC:1107 HGNC:11551 | ||
|gene_symbol=BRF1 ZFP36L1 | |gene_symbol=BRF1 ZFP36L1 | ||
| Line 37: | Line 37: | ||
|start_of_center_position=105249539 | |start_of_center_position=105249539 | ||
|strand=- | |strand=- | ||
| − | |tata_box= | + | |tata_box=59(TACTTTAAGAGG,-,0.00) |
| − | |transcript_name=ENST00000446501.6 NM_001242789 | + | |transcript_name=ENST00000446501.6 NM_001242789 AK096471 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_221293.1 | |tss_id=hg_221293.1 | ||
Revision as of 08:34, 17 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 105249539 |
|---|---|
| End of the center position in the TSS region: | 105249540 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000446501.6 NM_001242789 AK096471 |
|---|---|
| Distance: | 136 |
| Num_trans: | 6 |
| All_trans: | ENST00000446501.6:136 NM_001242789:136 AK096471:136 ENST00000552127.5:148 LF330691:-164 MA566268:-164 |
TATA-Box annotation
| Distance to TSS: | -136 |
|---|---|
| Nearest PromoterID: | NM_001242789 |
| Entrez ID: | 2972 |
| Nearest Unigene: | Hs.424484 |
| Nearest Refseq: | NM_001519 |
| Nearest Ensembl: | ENSG00000185024 |
| Gene Name: | BRF1 RNA polymerase III transcription initiation factor subunit; ZFP36 ring finger protein like 1 |
| Gene Alias: | BRF|BRF-1|CFDS|GTF3B|HEL-S-76p|TAF3B2|TAF3C|TAFIII90|TF3B90|TFIIIB90|hBRF |
| Gene Description: | BRF1 RNA polymerase III transcription initiation factor subunit |
| Gene Type: | protein-coding |
| CpG%: | 0.055 |
| GC%: | 0.646766 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | 59(TACTTTAAGAGG,-,0.00) |
