Difference between revisions of "TSS:Hg 221294.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
|PACS1L= | |PACS1L= | ||
| − | |all_trans=ENST00000325438.12:128 | + | |all_trans=ENST00000325438.12:128 AY320284:128 AB011174:457 ENST00000447393.6:461 NM_015197:461 NM_001100913:461 |
|chr=chr14 | |chr=chr14 | ||
|cpg_percent=0.11 | |cpg_percent=0.11 | ||
|distance=128 | |distance=128 | ||
| − | |distance_to_tss=- | + | |distance_to_tss=-461 |
|end=105314287 | |end=105314287 | ||
|end_of_center_position=105314287 | |end_of_center_position=105314287 | ||
|entrez_id=23241 | |entrez_id=23241 | ||
|gc_percent=0.756219 | |gc_percent=0.756219 | ||
| − | |gene_alias=PACS-2 | + | |gene_alias=EIEE66{{!}}PACS-2{{!}}PACS1L |
|gene_description=phosphofurin acidic cluster sorting protein 2 | |gene_description=phosphofurin acidic cluster sorting protein 2 | ||
|gene_id=23241 | |gene_id=23241 | ||
| Line 20: | Line 20: | ||
|hgnc_mgi_id=HGNC:23794 | |hgnc_mgi_id=HGNC:23794 | ||
|nearest_ensembl=ENSG00000179364 | |nearest_ensembl=ENSG00000179364 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001100913 |
|nearest_refseq=NM_015197 | |nearest_refseq=NM_015197 | ||
|nearest_unigene=Hs.525626 | |nearest_unigene=Hs.525626 | ||
| − | |num_trans= | + | |num_trans=6 |
|species=human | |species=human | ||
|start=105314286 | |start=105314286 | ||
|start_of_center_position=105314286 | |start_of_center_position=105314286 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name=ENST00000325438.12 | + | |transcript_name=ENST00000325438.12 AY320284 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_221294.1 | |tss_id=hg_221294.1 | ||
Revision as of 08:34, 17 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 105314286 |
|---|---|
| End of the center position in the TSS region: | 105314287 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000325438.12 AY320284 |
|---|---|
| Distance: | 128 |
| Num_trans: | 6 |
| All_trans: | ENST00000325438.12:128 AY320284:128 AB011174:457 ENST00000447393.6:461 NM_015197:461 NM_001100913:461 |
TATA-Box annotation
| Distance to TSS: | -461 |
|---|---|
| Nearest PromoterID: | NM_001100913 |
| Entrez ID: | 23241 |
| Nearest Unigene: | Hs.525626 |
| Nearest Refseq: | NM_015197 |
| Nearest Ensembl: | ENSG00000179364 |
| Gene Name: | phosphofurin acidic cluster sorting protein 2 |
| Gene Alias: | EIEE66|PACS-2|PACS1L |
| Gene Description: | phosphofurin acidic cluster sorting protein 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.11 |
| GC%: | 0.756219 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
