Difference between revisions of "TSS:Hg 222870.1"
From referenceTSS
| Line 8: | Line 8: | ||
|PN-II= | |PN-II= | ||
|PN2= | |PN2= | ||
| − | |all_trans=ENST00000359726.7:139 NM_001136131:139 | + | |all_trans=LF212681:-52 MA448258:-52 ENST00000359726.7:139 NM_001136131:139 LF385472:139 MA621049:139 AK296229:139 LF210650:207 MA446227:207 LF385141:447 MA620718:447 ENST00000357903.7:480 ENST00000346798.8:497 NM_001136129:497 NM_000484:497 NM_201414:497 NM_201413:497 NM_001204302:497 NM_001204301:497 NM_001204303:497 NM_001136130:497 NM_001385253:497 M35675:497 ENST00000348990.9:500 Y00264:500 AK297412:500 AK294534:500 AK298861:500 |
|chr=chr21 | |chr=chr21 | ||
|cpg_percent=0.045 | |cpg_percent=0.045 | ||
| − | |distance= | + | |distance=-52 |
|distance_to_tss=-139 | |distance_to_tss=-139 | ||
|end=26171267 | |end=26171267 | ||
| Line 17: | Line 17: | ||
|entrez_id=351 | |entrez_id=351 | ||
|gc_percent=0.437811 | |gc_percent=0.437811 | ||
| − | |gene_alias=AAA | + | |gene_alias=AAA{{!}}ABETA{{!}}ABPP{{!}}AD1{{!}}APPI{{!}}CTFgamma{{!}}CVAP{{!}}PN-II{{!}}PN2{{!}}preA4 |
|gene_description=amyloid beta precursor protein | |gene_description=amyloid beta precursor protein | ||
|gene_id=351 | |gene_id=351 | ||
| − | |gene_name= | + | |gene_name=APP |
|gene_source=HGNC:620 | |gene_source=HGNC:620 | ||
|gene_symbol=APP | |gene_symbol=APP | ||
| Line 30: | Line 30: | ||
|nearest_refseq=NM_000484 | |nearest_refseq=NM_000484 | ||
|nearest_unigene=Hs.434980 | |nearest_unigene=Hs.434980 | ||
| − | |num_trans= | + | |num_trans=28 |
|species=human | |species=human | ||
|start=26171266 | |start=26171266 | ||
|start_of_center_position=26171266 | |start_of_center_position=26171266 | ||
|strand=- | |strand=- | ||
| − | |transcript_name= | + | |transcript_name=LF212681 MA448258 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_222870.1 | |tss_id=hg_222870.1 | ||
Latest revision as of 08:51, 17 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 26171266 |
|---|---|
| End of the center position in the TSS region: | 26171267 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | LF212681 MA448258 |
|---|---|
| Distance: | -52 |
| Num_trans: | 28 |
| All_trans: | LF212681:-52 MA448258:-52 ENST00000359726.7:139 NM_001136131:139 LF385472:139 MA621049:139 AK296229:139 LF210650:207 MA446227:207 LF385141:447 MA620718:447 ENST00000357903.7:480 ENST00000346798.8:497 NM_001136129:497 NM_000484:497 NM_201414:497 NM_201413:497 NM_001204302:497 NM_001204301:497 NM_001204303:497 NM_001136130:497 NM_001385253:497 M35675:497 ENST00000348990.9:500 Y00264:500 AK297412:500 AK294534:500 AK298861:500 |
TATA-Box annotation
| Distance to TSS: | -139 |
|---|---|
| Nearest PromoterID: | NM_001136131 |
| Entrez ID: | 351 |
| Nearest Unigene: | Hs.434980 |
| Nearest Refseq: | NM_000484 |
| Nearest Ensembl: | ENSG00000142192 |
| Gene Name: | APP |
| Gene Alias: | AAA|ABETA|ABPP|AD1|APPI|CTFgamma|CVAP|PN-II|PN2|preA4 |
| Gene Description: | amyloid beta precursor protein |
| Gene Type: | protein-coding |
| CpG%: | 0.045 |
| GC%: | 0.437811 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
