Difference between revisions of "TSS:Hg 224228.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
|HEL113= | |HEL113= | ||
| − | |all_trans= | + | |all_trans=LF205547:-61 MA441124:-61 ENST00000497849.1:-112 ENST00000224237.9:282 ENST00000487938.5:282 AK222507:282 AK222602:282 EU794672:282 AK056766:282 AK091813:282 AK097336:282 AK098444:282 X16478:283 AK222482:284 ENST00000485947.1:295 AF328728:299 BC030573:303 BC000163:303 GQ900939:303 Z19554:308 LF346167:382 MA581744:382 X56134:384 AK290643:402 AB590763:424 CU674070:426 KJ892377:426 CR407690:427 KU178388:427 KU178389:427 ENST00000478746.1:-466 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.08 | |cpg_percent=0.08 | ||
| − | |distance=- | + | |distance=-61 |
| − | |distance_to_tss= | + | |distance_to_tss=747 |
|end=17228996 | |end=17228996 | ||
|end_of_center_position=17228989 | |end_of_center_position=17228989 | ||
|entrez_id=7431 | |entrez_id=7431 | ||
|gc_percent=0.696517 | |gc_percent=0.696517 | ||
| − | |gene_alias= | + | |gene_alias=- |
|gene_description=vimentin | |gene_description=vimentin | ||
|gene_id=7431 | |gene_id=7431 | ||
| − | |gene_name= | + | |gene_name=VIM |
|gene_source=HGNC:12692 | |gene_source=HGNC:12692 | ||
|gene_symbol=VIM | |gene_symbol=VIM | ||
| Line 28: | Line 28: | ||
|start_of_center_position=17228988 | |start_of_center_position=17228988 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name=LF205547 MA441124 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_224228.1 | |tss_id=hg_224228.1 | ||
Latest revision as of 09:15, 17 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 17228988 |
|---|---|
| End of the center position in the TSS region: | 17228989 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | LF205547 MA441124 |
|---|---|
| Distance: | -61 |
| Num_trans: | 31 |
| All_trans: | LF205547:-61 MA441124:-61 ENST00000497849.1:-112 ENST00000224237.9:282 ENST00000487938.5:282 AK222507:282 AK222602:282 EU794672:282 AK056766:282 AK091813:282 AK097336:282 AK098444:282 X16478:283 AK222482:284 ENST00000485947.1:295 AF328728:299 BC030573:303 BC000163:303 GQ900939:303 Z19554:308 LF346167:382 MA581744:382 X56134:384 AK290643:402 AB590763:424 CU674070:426 KJ892377:426 CR407690:427 KU178388:427 KU178389:427 ENST00000478746.1:-466 |
TATA-Box annotation
| Distance to TSS: | 747 |
|---|---|
| Nearest PromoterID: | NM_003380 |
| Entrez ID: | 7431 |
| Nearest Unigene: | Hs.455493 |
| Nearest Refseq: | NM_003380 |
| Nearest Ensembl: | ENSG00000026025 |
| Gene Name: | VIM |
| Gene Alias: | - |
| Gene Description: | vimentin |
| Gene Type: | protein-coding |
| CpG%: | 0.08 |
| GC%: | 0.696517 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
