Difference between revisions of "TSS:Hg 224570.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=BC073821:-287 ENST00000528542.6 | + | |all_trans=ENST00000525077.2:10 NM_001286606:10 LF370581:-78 MA606158:-78 BC073821:-287 ENST00000528542.6:-327 ENST00000450448.5:351 NM_173584:351 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.035 | |cpg_percent=0.035 | ||
| − | |distance= | + | |distance=10 |
| − | |distance_to_tss=- | + | |distance_to_tss=-12 |
|end=827909 | |end=827909 | ||
|end_of_center_position=827907 | |end_of_center_position=827907 | ||
| Line 19: | Line 19: | ||
|hgnc_mgi_id=HGNC:28703 | |hgnc_mgi_id=HGNC:28703 | ||
|nearest_ensembl=ENSG00000177685 | |nearest_ensembl=ENSG00000177685 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001286606 |
|nearest_refseq=NM_173584 | |nearest_refseq=NM_173584 | ||
|nearest_unigene=Hs.660936 | |nearest_unigene=Hs.660936 | ||
| − | |num_trans= | + | |num_trans=8 |
|species=human | |species=human | ||
|start=827904 | |start=827904 | ||
|start_of_center_position=827906 | |start_of_center_position=827906 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name=ENST00000525077.2 NM_001286606 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_224570.1 | |tss_id=hg_224570.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id=Q8N4Y2 |
}} | }} | ||
Revision as of 09:23, 17 June 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 827906 |
|---|---|
| End of the center position in the TSS region: | 827907 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000525077.2 NM_001286606 |
|---|---|
| Distance: | 10 |
| Num_trans: | 8 |
| All_trans: | ENST00000525077.2:10 NM_001286606:10 LF370581:-78 MA606158:-78 BC073821:-287 ENST00000528542.6:-327 ENST00000450448.5:351 NM_173584:351 |
TATA-Box annotation
| Distance to TSS: | -12 |
|---|---|
| Nearest PromoterID: | NM_001286606 |
| Entrez ID: | 283229 |
| Nearest Unigene: | Hs.660936 |
| Nearest Refseq: | NM_173584 |
| Nearest Ensembl: | ENSG00000177685 |
| Gene Name: | calcium release activated channel regulator 2B |
| Gene Alias: | EFCAB4A |
| Gene Description: | calcium release activated channel regulator 2B |
| Gene Type: | protein-coding |
| CpG%: | 0.035 |
| GC%: | 0.626866 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
