Difference between revisions of "TSS:Hg 22519.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=ENST00000281882. | + | |all_trans=ENST00000281882.8:-84 NM_001079530:-84 ENST00000619050.4:-109 ENST00000620207.1:-109 |
|chr=chr2 | |chr=chr2 | ||
|cpg_percent=0.03 | |cpg_percent=0.03 | ||
| − | |distance=- | + | |distance=-84 |
| − | |distance_to_tss= | + | |distance_to_tss=90 |
|end=130521318 | |end=130521318 | ||
|end_of_center_position=130521312 | |end_of_center_position=130521312 | ||
| Line 10: | Line 10: | ||
|gc_percent=0.567164 | |gc_percent=0.567164 | ||
|gene_alias=- | |gene_alias=- | ||
| − | |gene_description= | + | |gene_description=cripto, FRL-1, cryptic family 1B |
|gene_id=653275 | |gene_id=653275 | ||
| − | |gene_name= | + | |gene_name=cripto, FRL-1, cryptic family 1B |
|gene_source=HGNC:33983 | |gene_source=HGNC:33983 | ||
|gene_symbol=CFC1B | |gene_symbol=CFC1B | ||
| Line 22: | Line 22: | ||
|nearest_refseq=NM_001079530 | |nearest_refseq=NM_001079530 | ||
|nearest_unigene=Hs.503733 | |nearest_unigene=Hs.503733 | ||
| − | |num_trans= | + | |num_trans=4 |
|species=human | |species=human | ||
|start=130521305 | |start=130521305 | ||
|start_of_center_position=130521311 | |start_of_center_position=130521311 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name=ENST00000281882. | + | |transcript_name=ENST00000281882.8 NM_001079530 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_22519.1 | |tss_id=hg_22519.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id=P0CG36 |
}} | }} | ||
Revision as of 09:38, 17 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 130521311 |
|---|---|
| End of the center position in the TSS region: | 130521312 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000281882.8 NM_001079530 |
|---|---|
| Distance: | -84 |
| Num_trans: | 4 |
| All_trans: | ENST00000281882.8:-84 NM_001079530:-84 ENST00000619050.4:-109 ENST00000620207.1:-109 |
TATA-Box annotation
| Distance to TSS: | 90 |
|---|---|
| Nearest PromoterID: | NM_001079530 |
| Entrez ID: | 653275 |
| Nearest Unigene: | Hs.503733 |
| Nearest Refseq: | NM_001079530 |
| Nearest Ensembl: | ENSG00000152093 |
| Gene Name: | cripto, FRL-1, cryptic family 1B |
| Gene Alias: | - |
| Gene Description: | cripto, FRL-1, cryptic family 1B |
| Gene Type: | protein-coding |
| CpG%: | 0.03 |
| GC%: | 0.567164 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
