Difference between revisions of "TSS:Hg 226395.1"
From referenceTSS
Line 2: | Line 2: | ||
|SMAP-8= | |SMAP-8= | ||
|SMAP8= | |SMAP8= | ||
− | |all_trans=ENST00000565088.5:0 ENST00000568640.5 | + | |all_trans=ENST00000565088.5:0 ENST00000568640.5:0 AK055038:24 ENST00000563317.5:25 ENST00000568464.5:25 ENST00000563022.5:25 ENST00000562930.5:25 ENST00000563978.5:25 ENST00000569923.5:25 ENST00000356752.8:25 ENST00000563799.5:25 ENST00000562999.5:25 ENST00000570248.5:25 NM_001242836:25 NM_001242835:25 NR_040072:25 NM_001242834:25 NM_001378347:25 NM_001378344:25 NM_001242833:25 AK296415:25 AK316089:25 AK299949:25 AK131248:25 AB044944:25 AB044945:25 ENST00000562731.5:27 ENST00000566585.5:27 ENST00000564960.1:27 ENST00000568424.1:28 BC011795:37 ENST00000566192.5:-39 AB033006:39 AL136584:39 BC001527:41 AF308608:42 AB385436:131 AM393094:131 AM393323:131 KU178760:131 KU178761:131 KJ903114:131 |
|chr=chr16 | |chr=chr16 | ||
|cpg_percent=0.03 | |cpg_percent=0.03 | ||
Line 11: | Line 11: | ||
|entrez_id=65009 | |entrez_id=65009 | ||
|gc_percent=0.646766 | |gc_percent=0.646766 | ||
− | |gene_alias=BDM1 | + | |gene_alias=BDM1{{!}}SMAP-8{{!}}SMAP8 |
|gene_description=NDRG family member 4 | |gene_description=NDRG family member 4 | ||
|gene_id=65009 | |gene_id=65009 | ||
Line 24: | Line 24: | ||
|nearest_refseq=NM_020465 | |nearest_refseq=NM_020465 | ||
|nearest_unigene=Hs.322430 | |nearest_unigene=Hs.322430 | ||
− | |num_trans= | + | |num_trans=42 |
|species=human | |species=human | ||
|start=58500085 | |start=58500085 | ||
|start_of_center_position=58500101 | |start_of_center_position=58500101 | ||
|strand=+ | |strand=+ | ||
− | |tata_box= | + | |tata_box=9(CTGTATAAATGG,-,0.00) |
− | |transcript_name=ENST00000565088.5 ENST00000568640.5 | + | |transcript_name=ENST00000565088.5 ENST00000568640.5 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_226395.1 | |tss_id=hg_226395.1 |
Revision as of 10:05, 17 June 2021
Basic information about the TSS
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Start of the center position in the TSS region: | 58500101 |
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End of the center position in the TSS region: | 58500102 |
Gene and protein annotation
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Transcript annotation
Transcript_name: | ENST00000565088.5 ENST00000568640.5 |
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Distance: | 0 |
Num_trans: | 42 |
All_trans: | ENST00000565088.5:0 ENST00000568640.5:0 AK055038:24 ENST00000563317.5:25 ENST00000568464.5:25 ENST00000563022.5:25 ENST00000562930.5:25 ENST00000563978.5:25 ENST00000569923.5:25 ENST00000356752.8:25 ENST00000563799.5:25 ENST00000562999.5:25 ENST00000570248.5:25 NM_001242836:25 NM_001242835:25 NR_040072:25 NM_001242834:25 NM_001378347:25 NM_001378344:25 NM_001242833:25 AK296415:25 AK316089:25 AK299949:25 AK131248:25 AB044944:25 AB044945:25 ENST00000562731.5:27 ENST00000566585.5:27 ENST00000564960.1:27 ENST00000568424.1:28 BC011795:37 ENST00000566192.5:-39 AB033006:39 AL136584:39 BC001527:41 AF308608:42 AB385436:131 AM393094:131 AM393323:131 KU178760:131 KU178761:131 KJ903114:131 |
TATA-Box annotation
Distance to TSS: | -41 |
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Nearest PromoterID: | NM_001242835 |
Entrez ID: | 65009 |
Nearest Unigene: | Hs.322430 |
Nearest Refseq: | NM_020465 |
Nearest Ensembl: | ENSG00000103034 |
Gene Name: | NDRG family member 4 |
Gene Alias: | BDM1|SMAP-8|SMAP8 |
Gene Description: | NDRG family member 4 |
Gene Type: | protein-coding |
CpG%: | 0.03 |
GC%: | 0.646766 |
TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | 9(CTGTATAAATGG,-,0.00) |