Difference between revisions of "TSS:Hg 226397.1"
From referenceTSS
| Line 2: | Line 2: | ||
|SMAP-8= | |SMAP-8= | ||
|SMAP8= | |SMAP8= | ||
| − | |all_trans=AF308608:-37 BC001527:-38 AB033006:-40 AL136584:-40 BC011795:-42 AB385436:46 AM393094:46 AM393323:46 | + | |all_trans=AF308608:-37 BC001527:-38 AB033006:-40 AL136584:-40 BC011795:-42 AB385436:46 AM393094:46 AM393323:46 KU178760:46 KU178761:46 KJ903114:46 ENST00000568424.1:-51 ENST00000562731.5:-52 ENST00000566585.5:-52 ENST00000564960.1:-52 ENST00000563317.5:-54 ENST00000568464.5:-54 ENST00000563022.5:-54 ENST00000562930.5:-54 ENST00000563978.5:-54 ENST00000569923.5:-54 ENST00000356752.8:-54 ENST00000563799.5:-54 ENST00000562999.5:-54 ENST00000570248.5:-54 NM_001242836:-54 NM_001242835:-54 NR_040072:-54 NM_001242834:-54 NM_001378347:-54 NM_001378344:-54 NM_001242833:-54 AK296415:-54 AK316089:-54 AK299949:-54 AK131248:-54 AB044944:-54 AB044945:-54 AK055038:-55 ENST00000568640.5:-90 ENST00000565088.5:-107 ENST00000566192.5:-150 |
|chr=chr16 | |chr=chr16 | ||
|cpg_percent=0.045 | |cpg_percent=0.045 | ||
| Line 11: | Line 11: | ||
|entrez_id=65009 | |entrez_id=65009 | ||
|gc_percent=0.641791 | |gc_percent=0.641791 | ||
| − | |gene_alias=BDM1 | + | |gene_alias=BDM1{{!}}SMAP-8{{!}}SMAP8 |
|gene_description=NDRG family member 4 | |gene_description=NDRG family member 4 | ||
|gene_id=65009 | |gene_id=65009 | ||
| Line 24: | Line 24: | ||
|nearest_refseq=NM_020465 | |nearest_refseq=NM_020465 | ||
|nearest_unigene=Hs.322430 | |nearest_unigene=Hs.322430 | ||
| − | |num_trans= | + | |num_trans=42 |
|species=human | |species=human | ||
|start=58500196 | |start=58500196 | ||
|start_of_center_position=58500199 | |start_of_center_position=58500199 | ||
|strand=+ | |strand=+ | ||
| − | |tata_box= | + | |tata_box=-89(CTGTATAAATGG,-,0.00) |
|transcript_name=AF308608 | |transcript_name=AF308608 | ||
|tss_classification=yes | |tss_classification=yes | ||
Revision as of 10:05, 17 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 58500199 |
|---|---|
| End of the center position in the TSS region: | 58500200 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | AF308608 |
|---|---|
| Distance: | -37 |
| Num_trans: | 42 |
| All_trans: | AF308608:-37 BC001527:-38 AB033006:-40 AL136584:-40 BC011795:-42 AB385436:46 AM393094:46 AM393323:46 KU178760:46 KU178761:46 KJ903114:46 ENST00000568424.1:-51 ENST00000562731.5:-52 ENST00000566585.5:-52 ENST00000564960.1:-52 ENST00000563317.5:-54 ENST00000568464.5:-54 ENST00000563022.5:-54 ENST00000562930.5:-54 ENST00000563978.5:-54 ENST00000569923.5:-54 ENST00000356752.8:-54 ENST00000563799.5:-54 ENST00000562999.5:-54 ENST00000570248.5:-54 NM_001242836:-54 NM_001242835:-54 NR_040072:-54 NM_001242834:-54 NM_001378347:-54 NM_001378344:-54 NM_001242833:-54 AK296415:-54 AK316089:-54 AK299949:-54 AK131248:-54 AB044944:-54 AB044945:-54 AK055038:-55 ENST00000568640.5:-90 ENST00000565088.5:-107 ENST00000566192.5:-150 |
TATA-Box annotation
| Distance to TSS: | 57 |
|---|---|
| Nearest PromoterID: | NM_001242836 |
| Entrez ID: | 65009 |
| Nearest Unigene: | Hs.322430 |
| Nearest Refseq: | NM_020465 |
| Nearest Ensembl: | ENSG00000103034 |
| Gene Name: | NDRG family member 4 |
| Gene Alias: | BDM1|SMAP-8|SMAP8 |
| Gene Description: | NDRG family member 4 |
| Gene Type: | protein-coding |
| CpG%: | 0.045 |
| GC%: | 0.641791 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -89(CTGTATAAATGG,-,0.00) |
