Difference between revisions of "TSS:Hg 231427.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |all_trans=NM_001349119:-29 ENST00000450093.2:51 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.065 | |cpg_percent=0.065 | ||
| − | |distance= | + | |distance=-29 |
| − | |distance_to_tss= | + | |distance_to_tss=37 |
|end=32551722 | |end=32551722 | ||
|end_of_center_position=32551714 | |end_of_center_position=32551714 | ||
|entrez_id=100129250 | |entrez_id=100129250 | ||
|gc_percent=0.537313 | |gc_percent=0.537313 | ||
| − | |gene_alias=C9orf133 | + | |gene_alias=C9orf133{{!}}TOPORS-AS1 |
| − | |gene_description= | + | |gene_description=small integral membrane protein 27 |
|gene_id=100129250 | |gene_id=100129250 | ||
| − | |gene_name= | + | |gene_name=small integral membrane protein 27 |
|gene_source=HGNC:31420 | |gene_source=HGNC:31420 | ||
| − | |gene_symbol= | + | |gene_symbol=SMIM27 |
|gene_synonyms= | |gene_synonyms= | ||
| − | |gene_type= | + | |gene_type=protein-coding |
|hgnc_mgi_id=HGNC:31420 | |hgnc_mgi_id=HGNC:31420 | ||
|nearest_ensembl=ENSG00000235453 | |nearest_ensembl=ENSG00000235453 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001349119 |
| − | |nearest_refseq= | + | |nearest_refseq=NM_001349118 |
|nearest_unigene=Hs.664395 | |nearest_unigene=Hs.664395 | ||
| − | |num_trans= | + | |num_trans=2 |
|species=human | |species=human | ||
|start=32551704 | |start=32551704 | ||
|start_of_center_position=32551713 | |start_of_center_position=32551713 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name=NM_001349119 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_231427.1 | |tss_id=hg_231427.1 | ||
Revision as of 12:01, 17 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 32551713 |
|---|---|
| End of the center position in the TSS region: | 32551714 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | NM_001349119 |
|---|---|
| Distance: | -29 |
| Num_trans: | 2 |
| All_trans: | NM_001349119:-29 ENST00000450093.2:51 |
TATA-Box annotation
| Distance to TSS: | 37 |
|---|---|
| Nearest PromoterID: | NM_001349119 |
| Entrez ID: | 100129250 |
| Nearest Unigene: | Hs.664395 |
| Nearest Refseq: | NM_001349118 |
| Nearest Ensembl: | ENSG00000235453 |
| Gene Name: | small integral membrane protein 27 |
| Gene Alias: | C9orf133|TOPORS-AS1 |
| Gene Description: | small integral membrane protein 27 |
| Gene Type: | protein-coding |
| CpG%: | 0.065 |
| GC%: | 0.537313 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
