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Difference between revisions of "TSS:Hg 232058.1"

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Line 1: Line 1:
 
{{TSSDetail
 
{{TSSDetail
 
|FAM178A=
 
|FAM178A=
|all_trans=ENST00000238961.8:-114 NM_001136123:-114 NM_001243770:-114 NM_018121:-114 uc001krt.5:-114 AF460992:-114 AF460991:-114 AK292565:269 ENST00000370271.7:280 uc001krr.2:280 AL833126:280 AL832343:280 BC015131:286 BC047715:290 ENST00000370269.3:296 uc001krs.4:296 BC030565:296 BC064526:296 BC020915:304 ENST00000609386.1:313 uc001krq.5:313 BC073832:313 AL832383:318 AB385255:427 BC160007:427
+
|all_trans=AF460992:-114 AF460991:-114 AK292565:269 ENST00000370271.7:280 ENST00000649226.1:280 ENST00000238961.9:280 NM_001136123:280 NM_001243770:280 NM_018121:280 AL833126:280 AL832343:280 BC015131:286 BC047715:290 ENST00000370269.3:296 BC030565:296 BC064526:296 BC020915:304 ENST00000609386.1:313 BC073832:313 AL832383:318 AB385255:427 BC160007:427
 
|chr=chr10
 
|chr=chr10
 
|cpg_percent=0.105
 
|cpg_percent=0.105
 
|distance=-114
 
|distance=-114
|distance_to_tss=114
+
|distance_to_tss=-280
 
|end=100912683
 
|end=100912683
 
|end_of_center_position=100912683
 
|end_of_center_position=100912683
 
|entrez_id=55719
 
|entrez_id=55719
 
|gc_percent=0.701493
 
|gc_percent=0.701493
|gene_alias=C10orf6
+
|gene_alias=C10orf6{{!}}FAM178A
 
|gene_description=SMC5-SMC6 complex localization factor 2
 
|gene_description=SMC5-SMC6 complex localization factor 2
 
|gene_id=55719
 
|gene_id=55719
Line 20: Line 20:
 
|hgnc_mgi_id=HGNC:17814
 
|hgnc_mgi_id=HGNC:17814
 
|nearest_ensembl=ENSG00000119906
 
|nearest_ensembl=ENSG00000119906
|nearest_promoter_id=NM_001243770
+
|nearest_promoter_id=NM_001136123
 
|nearest_refseq=NM_018121
 
|nearest_refseq=NM_018121
 
|nearest_unigene=Hs.447458
 
|nearest_unigene=Hs.447458
|num_trans=25
+
|num_trans=22
 
|species=human
 
|species=human
 
|start=100912682
 
|start=100912682
 
|start_of_center_position=100912682
 
|start_of_center_position=100912682
 
|strand=+
 
|strand=+
|transcript_name=ENST00000238961.8 NM_001136123 NM_001243770 NM_018121 uc001krt.5 AF460992 AF460991
+
|transcript_name=AF460992 AF460991
 
|tss_classification=yes
 
|tss_classification=yes
 
|tss_id=hg_232058.1
 
|tss_id=hg_232058.1
 
|tss_score=1
 
|tss_score=1
|uniprot_id=Q8IX21
+
|uniprot_id=
 
}}
 
}}

Revision as of 12:15, 17 June 2021

Basic information about the TSS


TSS ID:hg_232058.1
Species:human
Chr:chr10
TSS Classification:yes
Start:100912682
End:100912683
Strand:+
TSS Score:1
Start of the center position in the TSS region:100912682
End of the center position in the TSS region:100912683



Gene and protein annotation


Transcript_name:AF460992 AF460991
Distance:-114
GeneID:55719
HGNC/MGI_ID:HGNC:17814
UniProt_ID:
Gene_name:SMC5-SMC6 complex localization factor 2
Gene_symbol:SLF2
Gene_synonyms:FLJ10512 FLJ25012
Gene_source:HGNC:17814



Transcript annotation


Transcript_name:AF460992 AF460991
Distance:-114
Num_trans:22
All_trans:AF460992:-114 AF460991:-114 AK292565:269 ENST00000370271.7:280 ENST00000649226.1:280 ENST00000238961.9:280 NM_001136123:280 NM_001243770:280 NM_018121:280 AL833126:280 AL832343:280 BC015131:286 BC047715:290 ENST00000370269.3:296 BC030565:296 BC064526:296 BC020915:304 ENST00000609386.1:313 BC073832:313 AL832383:318 AB385255:427 BC160007:427



TATA-Box annotation


Distance to TSS:-280
Nearest PromoterID:NM_001136123
Entrez ID:55719
Nearest Unigene:Hs.447458
Nearest Refseq:NM_018121
Nearest Ensembl:ENSG00000119906
Gene Name:SMC5-SMC6 complex localization factor 2
Gene Alias:C10orf6|FAM178A
Gene Description:SMC5-SMC6 complex localization factor 2
Gene Type:protein-coding
CpG%:0.105
GC%:0.701493
TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation):