Difference between revisions of "TSS:Hg 232130.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=ENST00000541549.2:42 JX312508:42 LP895213:43 ENST00000369144.8:48 NM_003750:48 AK309542:50 BC107776:55 BC064926:59 D50929:61 AK307610:65 U78311:76 BC033769:81 BC054342:84 U58046:91 BC114429:135 LF346032:187 MA581609:187 AB383762:189 AK302575:346 | ||
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.145 | |cpg_percent=0.145 | ||
| − | |distance= | + | |distance=42 |
| − | |distance_to_tss= | + | |distance_to_tss=35 |
|end=117375414 | |end=117375414 | ||
|end_of_center_position=119080874 | |end_of_center_position=119080874 | ||
| Line 10: | Line 11: | ||
|gene_alias=PDZK8 | |gene_alias=PDZK8 | ||
|gene_description=PDZ domain containing 8 | |gene_description=PDZ domain containing 8 | ||
| − | |gene_name= | + | |gene_id=8661 |
| + | |gene_name=eukaryotic translation initiation factor 3 subunit A | ||
| + | |gene_source=HGNC:3271 | ||
| + | |gene_symbol=EIF3A | ||
| + | |gene_synonyms=KIAA0139 TIF32 eIF3-p170 eIF3-theta | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:3271 | ||
|nearest_ensembl=ENSG00000165650 | |nearest_ensembl=ENSG00000165650 | ||
|nearest_promoter_id=NM_173791 | |nearest_promoter_id=NM_173791 | ||
|nearest_refseq=NM_173791 | |nearest_refseq=NM_173791 | ||
|nearest_unigene=Hs.501149 | |nearest_unigene=Hs.501149 | ||
| − | |num_trans= | + | |num_trans=19 |
|species=human | |species=human | ||
|start=117375395 | |start=117375395 | ||
|start_of_center_position=119080873 | |start_of_center_position=119080873 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name=ENST00000541549.2 JX312508 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_232130.1 | |tss_id=hg_232130.1 | ||
|tss_score=1 | |tss_score=1 | ||
| + | |uniprot_id=J9R021 | ||
}} | }} | ||
Revision as of 12:17, 17 June 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 119080873 |
|---|---|
| End of the center position in the TSS region: | 119080874 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000541549.2 JX312508 |
|---|---|
| Distance: | 42 |
| Num_trans: | 19 |
| All_trans: | ENST00000541549.2:42 JX312508:42 LP895213:43 ENST00000369144.8:48 NM_003750:48 AK309542:50 BC107776:55 BC064926:59 D50929:61 AK307610:65 U78311:76 BC033769:81 BC054342:84 U58046:91 BC114429:135 LF346032:187 MA581609:187 AB383762:189 AK302575:346 |
TATA-Box annotation
| Distance to TSS: | 35 |
|---|---|
| Nearest PromoterID: | NM_173791 |
| Entrez ID: | 118987 |
| Nearest Unigene: | Hs.501149 |
| Nearest Refseq: | NM_173791 |
| Nearest Ensembl: | ENSG00000165650 |
| Gene Name: | eukaryotic translation initiation factor 3 subunit A |
| Gene Alias: | PDZK8 |
| Gene Description: | PDZ domain containing 8 |
| Gene Type: | protein-coding |
| CpG%: | 0.145 |
| GC%: | 0.781095 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
