Difference between revisions of "TSS:Hg 232131.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=ENST00000541549.2:61 JX312508:61 LP895213:62 ENST00000369144.8:67 NM_003750:67 AK309542:69 BC107776:74 BC064926:78 D50929:80 AK307610:84 U78311:95 BC033769:100 BC054342:103 U58046:110 BC114429:154 LF346032:206 MA581609:206 AB383762:208 AK302575:365 | ||
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.025 | |cpg_percent=0.025 | ||
| − | |distance= | + | |distance=61 |
|distance_to_tss=-8040 | |distance_to_tss=-8040 | ||
|end=119068182 | |end=119068182 | ||
| Line 9: | Line 10: | ||
|gc_percent=0.38806 | |gc_percent=0.38806 | ||
|gene_alias=ACA19 | |gene_alias=ACA19 | ||
| − | |gene_description= | + | |gene_description=small nucleolar RNA, H/ACA box 19 |
| − | |gene_name= | + | |gene_id=8661 |
| + | |gene_name=eukaryotic translation initiation factor 3 subunit A | ||
| + | |gene_source=HGNC:3271 | ||
| + | |gene_symbol=EIF3A | ||
| + | |gene_synonyms=KIAA0139 TIF32 eIF3-p170 eIF3-theta | ||
|gene_type=snoRNA | |gene_type=snoRNA | ||
| + | |hgnc_mgi_id=HGNC:3271 | ||
|nearest_ensembl=ENSG00000207468 | |nearest_ensembl=ENSG00000207468 | ||
|nearest_promoter_id=NR_002917 | |nearest_promoter_id=NR_002917 | ||
|nearest_refseq=NR_002917 | |nearest_refseq=NR_002917 | ||
|nearest_unigene=Hs.688653 | |nearest_unigene=Hs.688653 | ||
| − | |num_trans= | + | |num_trans=19 |
|species=human | |species=human | ||
|start=119068174 | |start=119068174 | ||
|start_of_center_position=119080884 | |start_of_center_position=119080884 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name=ENST00000541549.2 JX312508 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_232131.1 | |tss_id=hg_232131.1 | ||
|tss_score=1 | |tss_score=1 | ||
| + | |uniprot_id=J9R021 | ||
}} | }} | ||
Revision as of 12:17, 17 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 119080884 |
|---|---|
| End of the center position in the TSS region: | 119080885 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000541549.2 JX312508 |
|---|---|
| Distance: | 61 |
| Num_trans: | 19 |
| All_trans: | ENST00000541549.2:61 JX312508:61 LP895213:62 ENST00000369144.8:67 NM_003750:67 AK309542:69 BC107776:74 BC064926:78 D50929:80 AK307610:84 U78311:95 BC033769:100 BC054342:103 U58046:110 BC114429:154 LF346032:206 MA581609:206 AB383762:208 AK302575:365 |
TATA-Box annotation
| Distance to TSS: | -8040 |
|---|---|
| Nearest PromoterID: | NR_002917 |
| Entrez ID: | 641451 |
| Nearest Unigene: | Hs.688653 |
| Nearest Refseq: | NR_002917 |
| Nearest Ensembl: | ENSG00000207468 |
| Gene Name: | eukaryotic translation initiation factor 3 subunit A |
| Gene Alias: | ACA19 |
| Gene Description: | small nucleolar RNA, H/ACA box 19 |
| Gene Type: | snoRNA |
| CpG%: | 0.025 |
| GC%: | 0.38806 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
