Difference between revisions of "TSS:Hg 232184.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
|SCEH= | |SCEH= | ||
| + | |all_trans=NM_001012508:8 ENST00000414069.2:53 BC040198:53 LF212161:-213 MA447738:-213 | ||
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.125 | |cpg_percent=0.125 | ||
| − | |distance= | + | |distance=8 |
| − | |distance_to_tss= | + | |distance_to_tss=24 |
|end=133373336 | |end=133373336 | ||
|end_of_center_position=133424625 | |end_of_center_position=133424625 | ||
|entrez_id=1892 | |entrez_id=1892 | ||
|gc_percent=0.751244 | |gc_percent=0.751244 | ||
| − | |gene_alias=ECHS1D | + | |gene_alias=ECHS1D{{!}}SCEH |
| − | |gene_description= | + | |gene_description=enoyl-CoA hydratase, short chain 1 |
| − | |gene_name= | + | |gene_id=503542 |
| + | |gene_name=shadow of prion protein | ||
| + | |gene_source=HGNC:16871 | ||
| + | |gene_symbol=SPRN | ||
| + | |gene_synonyms=FLJ41197 Shadoo bA108K14.1 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:16871 | ||
|nearest_ensembl=ENSG00000127884 | |nearest_ensembl=ENSG00000127884 | ||
|nearest_promoter_id=NM_004092 | |nearest_promoter_id=NM_004092 | ||
|nearest_refseq=NM_004092 | |nearest_refseq=NM_004092 | ||
|nearest_unigene=Hs.76394 | |nearest_unigene=Hs.76394 | ||
| − | |num_trans= | + | |num_trans=5 |
|species=human | |species=human | ||
|start=133373323 | |start=133373323 | ||
|start_of_center_position=133424624 | |start_of_center_position=133424624 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name=NM_001012508 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_232184.1 | |tss_id=hg_232184.1 | ||
|tss_score=1 | |tss_score=1 | ||
| + | |uniprot_id=Q5BIV9 | ||
}} | }} | ||
Revision as of 12:18, 17 June 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 133424624 |
|---|---|
| End of the center position in the TSS region: | 133424625 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | NM_001012508 |
|---|---|
| Distance: | 8 |
| Num_trans: | 5 |
| All_trans: | NM_001012508:8 ENST00000414069.2:53 BC040198:53 LF212161:-213 MA447738:-213 |
TATA-Box annotation
| Distance to TSS: | 24 |
|---|---|
| Nearest PromoterID: | NM_004092 |
| Entrez ID: | 1892 |
| Nearest Unigene: | Hs.76394 |
| Nearest Refseq: | NM_004092 |
| Nearest Ensembl: | ENSG00000127884 |
| Gene Name: | shadow of prion protein |
| Gene Alias: | ECHS1D|SCEH |
| Gene Description: | enoyl-CoA hydratase, short chain 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.125 |
| GC%: | 0.751244 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
