Difference between revisions of "TSS:Hg 232187.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
|SHO= | |SHO= | ||
| − | |all_trans= | + | |all_trans=AY027807:48 ENST00000432597.3:-415 BC136964:-415 |
|bA108K14.1= | |bA108K14.1= | ||
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.14 | |cpg_percent=0.14 | ||
| − | |distance= | + | |distance=48 |
|distance_to_tss=-8 | |distance_to_tss=-8 | ||
|end=133424625 | |end=133424625 | ||
| Line 11: | Line 11: | ||
|entrez_id=503542 | |entrez_id=503542 | ||
|gc_percent=0.761194 | |gc_percent=0.761194 | ||
| − | |gene_alias=SHADOO | + | |gene_alias=SHADOO{{!}}SHO{{!}}bA108K14.1 |
| − | |gene_description=shadow of prion protein | + | |gene_description=shadow of prion protein |
| − | |gene_id= | + | |gene_id=93426 |
| − | |gene_name= | + | |gene_name=synaptonemal complex central element protein 1 |
| − | |gene_source=HGNC: | + | |gene_source=HGNC:28852 |
| − | |gene_symbol= | + | |gene_symbol=SYCE1 |
| − | |gene_synonyms= | + | |gene_synonyms=CT76 bA108K14.6 |
|gene_type=protein-coding | |gene_type=protein-coding | ||
| − | |hgnc_mgi_id=HGNC: | + | |hgnc_mgi_id=HGNC:28852 |
|nearest_ensembl=ENSG00000203772 | |nearest_ensembl=ENSG00000203772 | ||
|nearest_promoter_id=NM_001012508 | |nearest_promoter_id=NM_001012508 | ||
|nearest_refseq=NM_001012508 | |nearest_refseq=NM_001012508 | ||
|nearest_unigene=Hs.64968 | |nearest_unigene=Hs.64968 | ||
| − | |num_trans= | + | |num_trans=3 |
|species=human | |species=human | ||
|start=133424624 | |start=133424624 | ||
|start_of_center_position=133569419 | |start_of_center_position=133569419 | ||
|strand=- | |strand=- | ||
| − | |transcript_name= | + | |transcript_name=AY027807 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_232187.1 | |tss_id=hg_232187.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id= |
}} | }} | ||
Revision as of 12:18, 17 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 133569419 |
|---|---|
| End of the center position in the TSS region: | 133569420 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | AY027807 |
|---|---|
| Distance: | 48 |
| Num_trans: | 3 |
| All_trans: | AY027807:48 ENST00000432597.3:-415 BC136964:-415 |
TATA-Box annotation
| Distance to TSS: | -8 |
|---|---|
| Nearest PromoterID: | NM_001012508 |
| Entrez ID: | 503542 |
| Nearest Unigene: | Hs.64968 |
| Nearest Refseq: | NM_001012508 |
| Nearest Ensembl: | ENSG00000203772 |
| Gene Name: | synaptonemal complex central element protein 1 |
| Gene Alias: | SHADOO|SHO|bA108K14.1 |
| Gene Description: | shadow of prion protein |
| Gene Type: | protein-coding |
| CpG%: | 0.14 |
| GC%: | 0.761194 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
