Difference between revisions of "TSS:Hg 232196.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |all_trans=LF346166:-37 MA581743:-37 ENST00000661048.1:-113 LF346168:-184 MA581745:-184 LF346171:-385 MA581748:-385 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.135 | |cpg_percent=0.135 | ||
| − | |distance=- | + | |distance=-37 |
|distance_to_tss=68 | |distance_to_tss=68 | ||
|end=15097248 | |end=15097248 | ||
| Line 12: | Line 12: | ||
|gene_description=ribonuclease P/MRP subunit p38 | |gene_description=ribonuclease P/MRP subunit p38 | ||
|gene_id=10557 | |gene_id=10557 | ||
| − | |gene_name= | + | |gene_name=RPP38 |
|gene_source=HGNC:30329 | |gene_source=HGNC:30329 | ||
|gene_symbol=RPP38 | |gene_symbol=RPP38 | ||
| Line 22: | Line 22: | ||
|nearest_refseq=NM_006414 | |nearest_refseq=NM_006414 | ||
|nearest_unigene=Hs.94986 | |nearest_unigene=Hs.94986 | ||
| − | |num_trans= | + | |num_trans=7 |
|species=human | |species=human | ||
|start=15097247 | |start=15097247 | ||
|start_of_center_position=17229301 | |start_of_center_position=17229301 | ||
|strand=+ | |strand=+ | ||
| − | |tata_box= | + | |tata_box=-86(GAGTCTAAAAGA,-,0.00) |
| − | |transcript_name= | + | |transcript_name=LF346166 MA581743 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_232196.1 | |tss_id=hg_232196.1 | ||
Revision as of 12:18, 17 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 17229301 |
|---|---|
| End of the center position in the TSS region: | 17229302 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | LF346166 MA581743 |
|---|---|
| Distance: | -37 |
| Num_trans: | 7 |
| All_trans: | LF346166:-37 MA581743:-37 ENST00000661048.1:-113 LF346168:-184 MA581745:-184 LF346171:-385 MA581748:-385 |
TATA-Box annotation
| Distance to TSS: | 68 |
|---|---|
| Nearest PromoterID: | NM_001265601 |
| Entrez ID: | 10557 |
| Nearest Unigene: | Hs.94986 |
| Nearest Refseq: | NM_006414 |
| Nearest Ensembl: | ENSG00000152464 |
| Gene Name: | RPP38 |
| Gene Alias: | - |
| Gene Description: | ribonuclease P/MRP subunit p38 |
| Gene Type: | protein-coding |
| CpG%: | 0.135 |
| GC%: | 0.671642 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -86(GAGTCTAAAAGA,-,0.00) |
