Difference between revisions of "TSS:Hg 232274.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
|OK/SW-cl.23= | |OK/SW-cl.23= | ||
| − | |all_trans= | + | |all_trans=ENST00000306006.10:-16 NM_005674:-16 X82125:-16 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.025 | |cpg_percent=0.025 | ||
| − | |distance=- | + | |distance=-16 |
|distance_to_tss=9907 | |distance_to_tss=9907 | ||
|end=43386932 | |end=43386932 | ||
| Line 10: | Line 10: | ||
|entrez_id=3185 | |entrez_id=3185 | ||
|gc_percent=0.507463 | |gc_percent=0.507463 | ||
| − | |gene_alias=HNRPF | + | |gene_alias=HNRPF{{!}}OK/SW-cl.23{{!}}mcs94-1 |
|gene_description=heterogeneous nuclear ribonucleoprotein F | |gene_description=heterogeneous nuclear ribonucleoprotein F | ||
| − | |gene_name= | + | |gene_id=8187 |
| + | |gene_name=zinc finger protein 239 | ||
| + | |gene_source=HGNC:13031 | ||
| + | |gene_symbol=ZNF239 | ||
| + | |gene_synonyms=HOK-2 MOK2 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:13031 | ||
|mcs94-1= | |mcs94-1= | ||
|nearest_ensembl=ENSG00000169813 | |nearest_ensembl=ENSG00000169813 | ||
| Line 24: | Line 29: | ||
|start_of_center_position=43568442 | |start_of_center_position=43568442 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name=ENST00000306006.10 NM_005674 X82125 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_232274.1 | |tss_id=hg_232274.1 | ||
|tss_score=1 | |tss_score=1 | ||
| + | |uniprot_id=Q16600 | ||
}} | }} | ||
Revision as of 12:20, 17 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 43568442 |
|---|---|
| End of the center position in the TSS region: | 43568443 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000306006.10 NM_005674 X82125 |
|---|---|
| Distance: | -16 |
| Num_trans: | 3 |
| All_trans: | ENST00000306006.10:-16 NM_005674:-16 X82125:-16 |
TATA-Box annotation
| Distance to TSS: | 9907 |
|---|---|
| Nearest PromoterID: | NM_001098208 |
| Entrez ID: | 3185 |
| Nearest Unigene: | Hs.808 |
| Nearest Refseq: | NM_004966 |
| Nearest Ensembl: | ENSG00000169813 |
| Gene Name: | zinc finger protein 239 |
| Gene Alias: | HNRPF|OK/SW-cl.23|mcs94-1 |
| Gene Description: | heterogeneous nuclear ribonucleoprotein F |
| Gene Type: | protein-coding |
| CpG%: | 0.025 |
| GC%: | 0.507463 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
