Difference between revisions of "TSS:Hg 232303.1"
From referenceTSS
| Line 2: | Line 2: | ||
|PDZK4= | |PDZK4= | ||
|PDZK5C= | |PDZK5C= | ||
| − | |all_trans= | + | |all_trans=ENST00000568584.6:70 NM_177987:70 ENST00000561967.1:73 ENST00000568866.5:89 ENST00000562809.1:97 ENST00000563456.1:97 BC156319:126 BC157066:126 BC101271:135 BC101270:135 ENST00000567466.1:-155 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.005 | |cpg_percent=0.005 | ||
| − | |distance= | + | |distance=70 |
|distance_to_tss=32 | |distance_to_tss=32 | ||
|end=48175111 | |end=48175111 | ||
| Line 11: | Line 11: | ||
|entrez_id=143162 | |entrez_id=143162 | ||
|gc_percent=0.567164 | |gc_percent=0.567164 | ||
| − | |gene_alias=PDZD5C | + | |gene_alias=PDZD5C{{!}}PDZK4{{!}}PDZK5C |
|gene_description=FERM and PDZ domain containing 2 | |gene_description=FERM and PDZ domain containing 2 | ||
| − | |gene_id= | + | |gene_id=347688 |
| − | |gene_name= | + | |gene_name=tubulin beta 8 class VIII |
| − | |gene_source=HGNC: | + | |gene_source=HGNC:20773 |
| − | |gene_symbol= | + | |gene_symbol=TUBB8 |
| − | |gene_synonyms= | + | |gene_synonyms=bA631M21.2 |
|gene_type=protein-coding | |gene_type=protein-coding | ||
| − | |hgnc_mgi_id=HGNC: | + | |hgnc_mgi_id=HGNC:20773 |
|nearest_ensembl=ENSG00000170324 | |nearest_ensembl=ENSG00000170324 | ||
|nearest_promoter_id=NM_001042512 | |nearest_promoter_id=NM_001042512 | ||
|nearest_refseq=NM_152428 | |nearest_refseq=NM_152428 | ||
|nearest_unigene=Hs.664786 | |nearest_unigene=Hs.664786 | ||
| − | |num_trans= | + | |num_trans=11 |
|species=human | |species=human | ||
|start=48175110 | |start=48175110 | ||
|start_of_center_position=49365 | |start_of_center_position=49365 | ||
|strand=- | |strand=- | ||
| − | |tata_box= | + | |tata_box=-62(GCTTTTATATCC,+,0.00) |
| − | |transcript_name= | + | |transcript_name=ENST00000568584.6 NM_177987 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_232303.1 | |tss_id=hg_232303.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id=Q3ZCM7 |
}} | }} | ||
Revision as of 12:21, 17 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 49365 |
|---|---|
| End of the center position in the TSS region: | 49366 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000568584.6 NM_177987 |
|---|---|
| Distance: | 70 |
| Num_trans: | 11 |
| All_trans: | ENST00000568584.6:70 NM_177987:70 ENST00000561967.1:73 ENST00000568866.5:89 ENST00000562809.1:97 ENST00000563456.1:97 BC156319:126 BC157066:126 BC101271:135 BC101270:135 ENST00000567466.1:-155 |
TATA-Box annotation
| Distance to TSS: | 32 |
|---|---|
| Nearest PromoterID: | NM_001042512 |
| Entrez ID: | 143162 |
| Nearest Unigene: | Hs.664786 |
| Nearest Refseq: | NM_152428 |
| Nearest Ensembl: | ENSG00000170324 |
| Gene Name: | tubulin beta 8 class VIII |
| Gene Alias: | PDZD5C|PDZK4|PDZK5C |
| Gene Description: | FERM and PDZ domain containing 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.005 |
| GC%: | 0.567164 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -62(GCTTTTATATCC,+,0.00) |
