Difference between revisions of "TSS:Hg 232344.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
|VR22= | |VR22= | ||
| + | |all_trans=AK124681:-46 | ||
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.1 | |cpg_percent=0.1 | ||
| − | |distance= | + | |distance=-46 |
| − | |distance_to_tss=- | + | |distance_to_tss=-68305 |
|end=67764503 | |end=67764503 | ||
|end_of_center_position=68828224 | |end_of_center_position=68828224 | ||
|entrez_id=29119 | |entrez_id=29119 | ||
|gc_percent=0.61194 | |gc_percent=0.61194 | ||
| − | |gene_alias=ARVD13 | + | |gene_alias=ARVD13{{!}}VR22 |
|gene_description=catenin alpha 3 | |gene_description=catenin alpha 3 | ||
| − | |gene_name= | + | |gene_id=219736 |
| + | |gene_name=storkhead box 1 | ||
| + | |gene_source=HGNC:23508 | ||
| + | |gene_symbol=STOX1 | ||
| + | |gene_synonyms=FLJ25162 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:23508 | ||
|nearest_ensembl=ENSG00000183230 | |nearest_ensembl=ENSG00000183230 | ||
|nearest_promoter_id=NM_013266 | |nearest_promoter_id=NM_013266 | ||
|nearest_refseq=NM_013266 | |nearest_refseq=NM_013266 | ||
|nearest_unigene=Hs.21375 | |nearest_unigene=Hs.21375 | ||
| − | |num_trans= | + | |num_trans=1 |
|species=human | |species=human | ||
|start=67764496 | |start=67764496 | ||
|start_of_center_position=68828223 | |start_of_center_position=68828223 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name=AK124681 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_232344.1 | |tss_id=hg_232344.1 | ||
|tss_score=1 | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Revision as of 12:22, 17 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 68828223 |
|---|---|
| End of the center position in the TSS region: | 68828224 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | AK124681 |
|---|---|
| Distance: | -46 |
| Num_trans: | 1 |
| All_trans: | AK124681:-46 |
TATA-Box annotation
| Distance to TSS: | -68305 |
|---|---|
| Nearest PromoterID: | NM_013266 |
| Entrez ID: | 29119 |
| Nearest Unigene: | Hs.21375 |
| Nearest Refseq: | NM_013266 |
| Nearest Ensembl: | ENSG00000183230 |
| Gene Name: | storkhead box 1 |
| Gene Alias: | ARVD13|VR22 |
| Gene Description: | catenin alpha 3 |
| Gene Type: | protein-coding |
| CpG%: | 0.1 |
| GC%: | 0.61194 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
