Difference between revisions of "TSS:Hg 232485.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
|MLR2= | |MLR2= | ||
| − | |all_trans= | + | |all_trans=AL834235:-9 LF345644:24 MA581221:24 NM_001002261:-76 LF345643:-158 MA581220:-158 LF345645:259 MA581222:259 LF345642:-295 MA581219:-295 LF345646:338 MA581223:338 LF345641:-473 MA581218:-473 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.14 | |cpg_percent=0.14 | ||
| − | |distance=- | + | |distance=-9 |
| − | |distance_to_tss= | + | |distance_to_tss=16 |
|end=96832322 | |end=96832322 | ||
|end_of_center_position=97738553 | |end_of_center_position=97738553 | ||
|entrez_id=84458 | |entrez_id=84458 | ||
|gc_percent=0.726368 | |gc_percent=0.726368 | ||
| − | |gene_alias=C10orf12 | + | |gene_alias=C10orf12{{!}}MLR2 |
|gene_description=ligand dependent nuclear receptor corepressor | |gene_description=ligand dependent nuclear receptor corepressor | ||
| − | |gene_name= | + | |gene_id=118813 |
| + | |gene_name=zinc finger FYVE-type containing 27 | ||
| + | |gene_source=HGNC:26559 | ||
| + | |gene_symbol=ZFYVE27 | ||
| + | |gene_synonyms=FLJ32919 SPG33 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:26559 | ||
|nearest_ensembl=ENSG00000196233 | |nearest_ensembl=ENSG00000196233 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001346516 |
|nearest_refseq=NM_015652 | |nearest_refseq=NM_015652 | ||
|nearest_unigene=Hs.427927 | |nearest_unigene=Hs.427927 | ||
| − | |num_trans= | + | |num_trans=14 |
|species=human | |species=human | ||
|start=96832305 | |start=96832305 | ||
|start_of_center_position=97738552 | |start_of_center_position=97738552 | ||
|strand=- | |strand=- | ||
| − | |transcript_name= | + | |transcript_name=AL834235 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_232485.1 | |tss_id=hg_232485.1 | ||
|tss_score=1 | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Revision as of 12:25, 17 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 97738552 |
|---|---|
| End of the center position in the TSS region: | 97738553 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | AL834235 |
|---|---|
| Distance: | -9 |
| Num_trans: | 14 |
| All_trans: | AL834235:-9 LF345644:24 MA581221:24 NM_001002261:-76 LF345643:-158 MA581220:-158 LF345645:259 MA581222:259 LF345642:-295 MA581219:-295 LF345646:338 MA581223:338 LF345641:-473 MA581218:-473 |
TATA-Box annotation
| Distance to TSS: | 16 |
|---|---|
| Nearest PromoterID: | NM_001346516 |
| Entrez ID: | 84458 |
| Nearest Unigene: | Hs.427927 |
| Nearest Refseq: | NM_015652 |
| Nearest Ensembl: | ENSG00000196233 |
| Gene Name: | zinc finger FYVE-type containing 27 |
| Gene Alias: | C10orf12|MLR2 |
| Gene Description: | ligand dependent nuclear receptor corepressor |
| Gene Type: | protein-coding |
| CpG%: | 0.14 |
| GC%: | 0.726368 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
