Difference between revisions of "TSS:Hg 23303.1"
From referenceTSS
| Line 2: | Line 2: | ||
|ITRAF= | |ITRAF= | ||
|TRAF2= | |TRAF2= | ||
| − | |all_trans= | + | |all_trans=ENST00000440506.5:0 ENST00000461338.5:41 ENST00000429217.5:41 ENST00000406287.5:46 ENST00000402568.5:46 ENST00000457887.5:103 ENST00000477952.1:124 ENST00000441987.5:125 ENST00000432692.6:125 ENST00000392749.7:125 NM_001199135:125 AK313096:125 ENST00000494976.1:129 BC067779:133 ENST00000405852.5:134 ENST00000483622.1:154 ENST00000456358.5:423 |
|chr=chr2 | |chr=chr2 | ||
|cpg_percent=0.055 | |cpg_percent=0.055 | ||
| Line 11: | Line 11: | ||
|entrez_id=10010 | |entrez_id=10010 | ||
|gc_percent=0.666667 | |gc_percent=0.666667 | ||
| − | |gene_alias=I-TRAF | + | |gene_alias=I-TRAF{{!}}ITRAF{{!}}TRAF2 |
|gene_description=TRAF family member associated NFKB activator | |gene_description=TRAF family member associated NFKB activator | ||
|gene_id=10010 | |gene_id=10010 | ||
| Line 24: | Line 24: | ||
|nearest_refseq=NM_004180 | |nearest_refseq=NM_004180 | ||
|nearest_unigene=Hs.132257 | |nearest_unigene=Hs.132257 | ||
| − | |num_trans= | + | |num_trans=17 |
|species=human | |species=human | ||
|start=161160293 | |start=161160293 | ||
|start_of_center_position=161160298 | |start_of_center_position=161160298 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name=ENST00000440506.5 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_23303.1 | |tss_id=hg_23303.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id=E7EWR8 | + | |uniprot_id=E7EWR8 |
}} | }} | ||
Revision as of 12:38, 17 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 161160298 |
|---|---|
| End of the center position in the TSS region: | 161160299 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000440506.5 |
|---|---|
| Distance: | 0 |
| Num_trans: | 17 |
| All_trans: | ENST00000440506.5:0 ENST00000461338.5:41 ENST00000429217.5:41 ENST00000406287.5:46 ENST00000402568.5:46 ENST00000457887.5:103 ENST00000477952.1:124 ENST00000441987.5:125 ENST00000432692.6:125 ENST00000392749.7:125 NM_001199135:125 AK313096:125 ENST00000494976.1:129 BC067779:133 ENST00000405852.5:134 ENST00000483622.1:154 ENST00000456358.5:423 |
TATA-Box annotation
| Distance to TSS: | -130 |
|---|---|
| Nearest PromoterID: | NM_001199135 |
| Entrez ID: | 10010 |
| Nearest Unigene: | Hs.132257 |
| Nearest Refseq: | NM_004180 |
| Nearest Ensembl: | ENSG00000136560 |
| Gene Name: | TRAF family member associated NFKB activator |
| Gene Alias: | I-TRAF|ITRAF|TRAF2 |
| Gene Description: | TRAF family member associated NFKB activator |
| Gene Type: | protein-coding |
| CpG%: | 0.055 |
| GC%: | 0.666667 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
