Difference between revisions of "TSS:Hg 233157.1"
From referenceTSS
| Line 2: | Line 2: | ||
|MPS1= | |MPS1= | ||
|S27= | |S27= | ||
| + | |all_trans=BC117210:15 BC143765:16 ENST00000304760.3:-347 NM_001010846:-347 NR_135169:-347 | ||
|chr=chr1 | |chr=chr1 | ||
|cpg_percent=0.015 | |cpg_percent=0.015 | ||
| − | |distance= | + | |distance=15 |
| − | |distance_to_tss= | + | |distance_to_tss=815 |
|end=153991579 | |end=153991579 | ||
|end_of_center_position=154502065 | |end_of_center_position=154502065 | ||
|entrez_id=6232 | |entrez_id=6232 | ||
|gc_percent=0.442786 | |gc_percent=0.442786 | ||
| − | |gene_alias=MPS-1 | + | |gene_alias=DBA17{{!}}MPS-1{{!}}MPS1{{!}}S27 |
|gene_description=ribosomal protein S27 | |gene_description=ribosomal protein S27 | ||
| − | |gene_name= | + | |gene_id=126669 |
| + | |gene_name=Src homology 2 domain containing E | ||
| + | |gene_source=HGNC:27004 | ||
| + | |gene_symbol=SHE | ||
| + | |gene_synonyms= | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:27004 | ||
|nearest_ensembl=ENSG00000177954 | |nearest_ensembl=ENSG00000177954 | ||
|nearest_promoter_id=NM_001030 | |nearest_promoter_id=NM_001030 | ||
|nearest_refseq=NM_001030 | |nearest_refseq=NM_001030 | ||
|nearest_unigene=Hs.546291 | |nearest_unigene=Hs.546291 | ||
| − | |num_trans= | + | |num_trans=5 |
|species=human | |species=human | ||
|start=153991575 | |start=153991575 | ||
|start_of_center_position=154502064 | |start_of_center_position=154502064 | ||
|strand=- | |strand=- | ||
| − | |transcript_name= | + | |transcript_name=BC117210 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_233157.1 | |tss_id=hg_233157.1 | ||
|tss_score=1 | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Revision as of 12:41, 17 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 154502064 |
|---|---|
| End of the center position in the TSS region: | 154502065 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | BC117210 |
|---|---|
| Distance: | 15 |
| Num_trans: | 5 |
| All_trans: | BC117210:15 BC143765:16 ENST00000304760.3:-347 NM_001010846:-347 NR_135169:-347 |
TATA-Box annotation
| Distance to TSS: | 815 |
|---|---|
| Nearest PromoterID: | NM_001030 |
| Entrez ID: | 6232 |
| Nearest Unigene: | Hs.546291 |
| Nearest Refseq: | NM_001030 |
| Nearest Ensembl: | ENSG00000177954 |
| Gene Name: | Src homology 2 domain containing E |
| Gene Alias: | DBA17|MPS-1|MPS1|S27 |
| Gene Description: | ribosomal protein S27 |
| Gene Type: | protein-coding |
| CpG%: | 0.015 |
| GC%: | 0.442786 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
