Difference between revisions of "TSS:Hg 233231.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
|TRIM5alpha= | |TRIM5alpha= | ||
| − | |all_trans= | + | |all_trans=ENST00000317037.2:71 BC140732:71 NM_001005174:93 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.01 | |cpg_percent=0.01 | ||
| − | |distance= | + | |distance=71 |
| − | |distance_to_tss= | + | |distance_to_tss=4981 |
|end=5680093 | |end=5680093 | ||
|end_of_center_position=5820243 | |end_of_center_position=5820243 | ||
|entrez_id=85363 | |entrez_id=85363 | ||
|gc_percent=0.537313 | |gc_percent=0.537313 | ||
| − | |gene_alias=RNF88 | + | |gene_alias=RNF88{{!}}TRIM5alpha |
|gene_description=tripartite motif containing 5 | |gene_description=tripartite motif containing 5 | ||
| − | |gene_id= | + | |gene_id=390077 |
| − | |gene_name= | + | |gene_name=olfactory receptor family 52 subfamily N member 2 |
| − | |gene_source=HGNC: | + | |gene_source=HGNC:15228 |
| − | |gene_symbol= | + | |gene_symbol=OR52N2 |
| − | |gene_synonyms= | + | |gene_synonyms= |
|gene_type=protein-coding | |gene_type=protein-coding | ||
| − | |hgnc_mgi_id=HGNC: | + | |hgnc_mgi_id=HGNC:15228 |
|nearest_ensembl=ENSG00000132256 | |nearest_ensembl=ENSG00000132256 | ||
|nearest_promoter_id=NM_033093 | |nearest_promoter_id=NM_033093 | ||
|nearest_refseq=NM_033034 | |nearest_refseq=NM_033034 | ||
|nearest_unigene=Hs.125300 | |nearest_unigene=Hs.125300 | ||
| − | |num_trans= | + | |num_trans=3 |
|species=human | |species=human | ||
|start=5680092 | |start=5680092 | ||
|start_of_center_position=5820242 | |start_of_center_position=5820242 | ||
|strand=- | |strand=- | ||
| − | |transcript_name= | + | |transcript_name=ENST00000317037.2 BC140732 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_233231.1 | |tss_id=hg_233231.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id=Q8NGI0 |
}} | }} | ||
Revision as of 12:42, 17 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 5820242 |
|---|---|
| End of the center position in the TSS region: | 5820243 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000317037.2 BC140732 |
|---|---|
| Distance: | 71 |
| Num_trans: | 3 |
| All_trans: | ENST00000317037.2:71 BC140732:71 NM_001005174:93 |
TATA-Box annotation
| Distance to TSS: | 4981 |
|---|---|
| Nearest PromoterID: | NM_033093 |
| Entrez ID: | 85363 |
| Nearest Unigene: | Hs.125300 |
| Nearest Refseq: | NM_033034 |
| Nearest Ensembl: | ENSG00000132256 |
| Gene Name: | olfactory receptor family 52 subfamily N member 2 |
| Gene Alias: | RNF88|TRIM5alpha |
| Gene Description: | tripartite motif containing 5 |
| Gene Type: | protein-coding |
| CpG%: | 0.01 |
| GC%: | 0.537313 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
