Difference between revisions of "TSS:Hg 233232.1"
From referenceTSS
| Line 4: | Line 4: | ||
|TRKA= | |TRKA= | ||
|Trk-A= | |Trk-A= | ||
| − | |all_trans= | + | |all_trans=ENST00000624470.2:-82 |
|chr=chr1 | |chr=chr1 | ||
|cpg_percent=0.015 | |cpg_percent=0.015 | ||
| − | |distance= | + | |distance=-82 |
|distance_to_tss=-79 | |distance_to_tss=-79 | ||
|end=156815671 | |end=156815671 | ||
| Line 13: | Line 13: | ||
|entrez_id=4914 | |entrez_id=4914 | ||
|gc_percent=0.522388 | |gc_percent=0.522388 | ||
| − | |gene_alias=MTC | + | |gene_alias=MTC{{!}}TRK{{!}}TRK1{{!}}TRKA{{!}}Trk-A{{!}}p140-TrkA |
|gene_description=neurotrophic receptor tyrosine kinase 1 | |gene_description=neurotrophic receptor tyrosine kinase 1 | ||
| − | |gene_id= | + | |gene_id=219959 |
| − | |gene_name= | + | |gene_name=olfactory receptor family 1 subfamily S member 1 |
| − | |gene_source=HGNC: | + | |gene_source=HGNC:8227 |
| − | |gene_symbol= | + | |gene_symbol=OR1S1 |
| − | |gene_synonyms= | + | |gene_synonyms=OST034 |
|gene_type=protein-coding | |gene_type=protein-coding | ||
| − | |hgnc_mgi_id=HGNC: | + | |hgnc_mgi_id=HGNC:8227 |
|nearest_ensembl=ENSG00000198400 | |nearest_ensembl=ENSG00000198400 | ||
|nearest_promoter_id=NM_001007792 | |nearest_promoter_id=NM_001007792 | ||
|nearest_refseq=NM_002529 | |nearest_refseq=NM_002529 | ||
|nearest_unigene=Hs.406293 | |nearest_unigene=Hs.406293 | ||
| − | |num_trans= | + | |num_trans=1 |
|p140-TrkA= | |p140-TrkA= | ||
|species=human | |species=human | ||
| Line 32: | Line 32: | ||
|start_of_center_position=58214826 | |start_of_center_position=58214826 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name=ENST00000624470.2 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_233232.1 | |tss_id=hg_233232.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id=Q8NH92 |
}} | }} | ||
Revision as of 12:42, 17 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 58214826 |
|---|---|
| End of the center position in the TSS region: | 58214827 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000624470.2 |
|---|---|
| Distance: | -82 |
| Num_trans: | 1 |
| All_trans: | ENST00000624470.2:-82 |
TATA-Box annotation
| Distance to TSS: | -79 |
|---|---|
| Nearest PromoterID: | NM_001007792 |
| Entrez ID: | 4914 |
| Nearest Unigene: | Hs.406293 |
| Nearest Refseq: | NM_002529 |
| Nearest Ensembl: | ENSG00000198400 |
| Gene Name: | olfactory receptor family 1 subfamily S member 1 |
| Gene Alias: | MTC|TRK|TRK1|TRKA|Trk-A|p140-TrkA |
| Gene Description: | neurotrophic receptor tyrosine kinase 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.015 |
| GC%: | 0.522388 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
