Difference between revisions of "TSS:Hg 233562.1"
From referenceTSS
| Line 3: | Line 3: | ||
|PP1alpha= | |PP1alpha= | ||
|PPP1A= | |PPP1A= | ||
| − | |all_trans= | + | |all_trans=ENST00000286031.10:135 AL354614:135 EU832166:-171 EU832260:-171 AK299369:-180 AK310638:-184 AK096493:-184 BC091516:-188 ENST00000466580.6:-195 ENST00000459772.5:-195 AK001568:-195 ENST00000496973.5:-231 ENST00000481744.5:-231 BC011012:-231 ENST00000359326.9:-234 NR_159440:-234 NM_001320050:-234 NM_001366771:-234 NM_001366769:-234 NM_001366768:-234 NM_001320047:-234 NM_001366773:-234 NM_001366772:-234 NM_001366770:-234 AK303296:-234 NM_001363739:-275 NM_001320048:-275 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.035 | |cpg_percent=0.035 | ||
| − | |distance= | + | |distance=135 |
| − | |distance_to_tss= | + | |distance_to_tss=3132 |
|end=67398728 | |end=67398728 | ||
|end_of_center_position=169795274 | |end_of_center_position=169795274 | ||
|entrez_id=5499 | |entrez_id=5499 | ||
|gc_percent=0.562189 | |gc_percent=0.562189 | ||
| − | |gene_alias=PP-1A | + | |gene_alias=PP-1A{{!}}PP1A{{!}}PP1alpha{{!}}PPP1A |
|gene_description=protein phosphatase 1 catalytic subunit alpha | |gene_description=protein phosphatase 1 catalytic subunit alpha | ||
| − | |gene_name= | + | |gene_id=55732 |
| + | |gene_name=chromosome 1 open reading frame 112 | ||
| + | |gene_source=HGNC:25565 | ||
| + | |gene_symbol=C1orf112 | ||
| + | |gene_synonyms=FLJ10706 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:25565 | ||
|nearest_ensembl=ENSG00000172531 | |nearest_ensembl=ENSG00000172531 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_002708 |
|nearest_refseq=NM_002708 | |nearest_refseq=NM_002708 | ||
|nearest_unigene=Hs.183994 | |nearest_unigene=Hs.183994 | ||
| − | |num_trans= | + | |num_trans=27 |
|species=human | |species=human | ||
|start=67398723 | |start=67398723 | ||
|start_of_center_position=169795273 | |start_of_center_position=169795273 | ||
|strand=+ | |strand=+ | ||
| − | |tata_box= | + | |tata_box=-84(GGATCTAAAAGA,-,0.00) |
| − | |transcript_name= | + | |transcript_name=ENST00000286031.10 AL354614 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_233562.1 | |tss_id=hg_233562.1 | ||
|tss_score=1 | |tss_score=1 | ||
| + | |uniprot_id=A0A024R922 | ||
}} | }} | ||
Revision as of 12:50, 17 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 169795273 |
|---|---|
| End of the center position in the TSS region: | 169795274 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000286031.10 AL354614 |
|---|---|
| Distance: | 135 |
| Num_trans: | 27 |
| All_trans: | ENST00000286031.10:135 AL354614:135 EU832166:-171 EU832260:-171 AK299369:-180 AK310638:-184 AK096493:-184 BC091516:-188 ENST00000466580.6:-195 ENST00000459772.5:-195 AK001568:-195 ENST00000496973.5:-231 ENST00000481744.5:-231 BC011012:-231 ENST00000359326.9:-234 NR_159440:-234 NM_001320050:-234 NM_001366771:-234 NM_001366769:-234 NM_001366768:-234 NM_001320047:-234 NM_001366773:-234 NM_001366772:-234 NM_001366770:-234 AK303296:-234 NM_001363739:-275 NM_001320048:-275 |
TATA-Box annotation
| Distance to TSS: | 3132 |
|---|---|
| Nearest PromoterID: | NM_002708 |
| Entrez ID: | 5499 |
| Nearest Unigene: | Hs.183994 |
| Nearest Refseq: | NM_002708 |
| Nearest Ensembl: | ENSG00000172531 |
| Gene Name: | chromosome 1 open reading frame 112 |
| Gene Alias: | PP-1A|PP1A|PP1alpha|PPP1A |
| Gene Description: | protein phosphatase 1 catalytic subunit alpha |
| Gene Type: | protein-coding |
| CpG%: | 0.035 |
| GC%: | 0.562189 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -84(GGATCTAAAAGA,-,0.00) |
