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Difference between revisions of "TSS:Hg 233568.1"

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{{TSSDetail
 
{{TSSDetail
 +
|all_trans=ENST00000439373.3:0 NM_001136107:0 LP895729:42 BC157860:88 BC171858:88
 
|chr=chr11
 
|chr=chr11
 
|cpg_percent=0.065
 
|cpg_percent=0.065
|distance=
+
|distance=0
 
|distance_to_tss=-4601
 
|distance_to_tss=-4601
 
|end=67620271
 
|end=67620271
Line 9: Line 10:
 
|gc_percent=0.532338
 
|gc_percent=0.532338
 
|gene_alias=-
 
|gene_alias=-
|gene_description=double C2 domain gamma pseudogene
+
|gene_description=double C2 domain gamma, pseudogene
|gene_name=DOC2GP
+
|gene_id=149281
 +
|gene_name=methyltransferase like 11B
 +
|gene_source=HGNC:31932
 +
|gene_symbol=METTL11B
 +
|gene_synonyms=HOMT1B
 
|gene_type=pseudo
 
|gene_type=pseudo
 +
|hgnc_mgi_id=HGNC:31932
 
|nearest_ensembl=
 
|nearest_ensembl=
 
|nearest_promoter_id=NR_033791
 
|nearest_promoter_id=NR_033791
 
|nearest_refseq=NR_033791
 
|nearest_refseq=NR_033791
 
|nearest_unigene=Hs.523838
 
|nearest_unigene=Hs.523838
|num_trans=0
+
|num_trans=5
 
|species=human
 
|species=human
 
|start=67620258
 
|start=67620258
 
|start_of_center_position=170145958
 
|start_of_center_position=170145958
 
|strand=-
 
|strand=-
|tata_box="49(GCTCTTAAGGCG,+,0.00)"
+
|tata_box=49(GCTCTTAAGGCG,+,0.00)
|transcript_name=
+
|transcript_name=ENST00000439373.3 NM_001136107
 
|tss_classification=yes
 
|tss_classification=yes
 
|tss_id=hg_233568.1
 
|tss_id=hg_233568.1
 
|tss_score=1
 
|tss_score=1
 +
|uniprot_id=Q5VVY1
 
}}
 
}}

Revision as of 12:50, 17 June 2021

Basic information about the TSS


TSS ID:hg_233568.1
Species:human
Chr:chr11
TSS Classification:yes
Start:67620258
End:67620271
Strand:-
TSS Score:1
Start of the center position in the TSS region:170145958
End of the center position in the TSS region:170145959



Gene and protein annotation


Transcript_name:ENST00000439373.3 NM_001136107
Distance:0
GeneID:149281
HGNC/MGI_ID:HGNC:31932
UniProt_ID:Q5VVY1
Gene_name:methyltransferase like 11B
Gene_symbol:METTL11B
Gene_synonyms:HOMT1B
Gene_source:HGNC:31932



Transcript annotation


Transcript_name:ENST00000439373.3 NM_001136107
Distance:0
Num_trans:5
All_trans:ENST00000439373.3:0 NM_001136107:0 LP895729:42 BC157860:88 BC171858:88



TATA-Box annotation


Distance to TSS:-4601
Nearest PromoterID:NR_033791
Entrez ID:390213
Nearest Unigene:Hs.523838
Nearest Refseq:NR_033791
Nearest Ensembl:
Gene Name:methyltransferase like 11B
Gene Alias:-
Gene Description:double C2 domain gamma, pseudogene
Gene Type:pseudo
CpG%:0.065
GC%:0.532338
TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation):49(GCTCTTAAGGCG,+,0.00)