Difference between revisions of "TSS:Hg 233599.1"
From referenceTSS
| Line 2: | Line 2: | ||
|HOMT1B= | |HOMT1B= | ||
|NTM1B= | |NTM1B= | ||
| − | |all_trans= | + | |all_trans=ENST00000540345.5:109 NM_001146209:109 AY495087:109 |
|chr=chr1 | |chr=chr1 | ||
|cpg_percent=0.01 | |cpg_percent=0.01 | ||
| − | |distance= | + | |distance=109 |
|distance_to_tss=-88 | |distance_to_tss=-88 | ||
|end=170145959 | |end=170145959 | ||
| Line 11: | Line 11: | ||
|entrez_id=149281 | |entrez_id=149281 | ||
|gc_percent=0.532338 | |gc_percent=0.532338 | ||
| − | |gene_alias=C1orf184 | + | |gene_alias=C1orf184{{!}}HOMT1B{{!}}NTM1B |
|gene_description=methyltransferase like 11B | |gene_description=methyltransferase like 11B | ||
| − | |gene_id= | + | |gene_id=5138 |
| − | |gene_name= | + | |gene_name=phosphodiesterase 2A |
| − | |gene_source=HGNC: | + | |gene_source=HGNC:8777 |
| − | |gene_symbol= | + | |gene_symbol=PDE2A |
| − | |gene_synonyms= | + | |gene_synonyms= |
|gene_type=protein-coding | |gene_type=protein-coding | ||
| − | |hgnc_mgi_id=HGNC: | + | |hgnc_mgi_id=HGNC:8777 |
|nearest_ensembl=ENSG00000203740 | |nearest_ensembl=ENSG00000203740 | ||
|nearest_promoter_id=NM_001136107 | |nearest_promoter_id=NM_001136107 | ||
|nearest_refseq=NM_001136107 | |nearest_refseq=NM_001136107 | ||
|nearest_unigene=Hs.553612 | |nearest_unigene=Hs.553612 | ||
| − | |num_trans= | + | |num_trans=3 |
|species=human | |species=human | ||
|start=170145958 | |start=170145958 | ||
|start_of_center_position=72669172 | |start_of_center_position=72669172 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name=ENST00000540345.5 NM_001146209 AY495087 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_233599.1 | |tss_id=hg_233599.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id=O00408 Q8IW54 |
}} | }} | ||
Revision as of 12:51, 17 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 72669172 |
|---|---|
| End of the center position in the TSS region: | 72669173 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000540345.5 NM_001146209 AY495087 |
|---|---|
| Distance: | 109 |
| Num_trans: | 3 |
| All_trans: | ENST00000540345.5:109 NM_001146209:109 AY495087:109 |
TATA-Box annotation
| Distance to TSS: | -88 |
|---|---|
| Nearest PromoterID: | NM_001136107 |
| Entrez ID: | 149281 |
| Nearest Unigene: | Hs.553612 |
| Nearest Refseq: | NM_001136107 |
| Nearest Ensembl: | ENSG00000203740 |
| Gene Name: | phosphodiesterase 2A |
| Gene Alias: | C1orf184|HOMT1B|NTM1B |
| Gene Description: | methyltransferase like 11B |
| Gene Type: | protein-coding |
| CpG%: | 0.01 |
| GC%: | 0.532338 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
