Difference between revisions of "TSS:Hg 233624.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |all_trans=ENST00000528947.5:15 BC021714:69 ENST00000299492.9:246 NR_147792:246 NM_003621:246 NM_001351862:246 NM_001351856:246 NM_001351854:246 NM_001351853:246 NM_001351855:246 AK308398:246 AK001131:246 ENST00000526873.5:-455 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.015 | |cpg_percent=0.015 | ||
| − | |distance= | + | |distance=15 |
|distance_to_tss=1866 | |distance_to_tss=1866 | ||
|end=72016157 | |end=72016157 | ||
| Line 11: | Line 11: | ||
|gene_alias=- | |gene_alias=- | ||
|gene_description=uncharacterized LOC100128494 | |gene_description=uncharacterized LOC100128494 | ||
| − | |gene_id= | + | |gene_id=8495 |
| − | |gene_name= | + | |gene_name=PPFIA binding protein 2 |
| − | |gene_source=HGNC: | + | |gene_source=HGNC:9250 |
| − | |gene_symbol= | + | |gene_symbol=PPFIBP2 |
| − | |gene_synonyms= | + | |gene_synonyms=Cclp1 |
|gene_type=ncRNA | |gene_type=ncRNA | ||
| − | |hgnc_mgi_id=HGNC: | + | |hgnc_mgi_id=HGNC:9250 |
|nearest_ensembl=ENSG00000251143 | |nearest_ensembl=ENSG00000251143 | ||
|nearest_promoter_id=NR_104178 | |nearest_promoter_id=NR_104178 | ||
|nearest_refseq=NR_104178 | |nearest_refseq=NR_104178 | ||
|nearest_unigene=Hs.713607 | |nearest_unigene=Hs.713607 | ||
| − | |num_trans= | + | |num_trans=13 |
|species=human | |species=human | ||
|start=72016156 | |start=72016156 | ||
|start_of_center_position=7513752 | |start_of_center_position=7513752 | ||
|strand=- | |strand=- | ||
| − | |transcript_name= | + | |transcript_name=ENST00000528947.5 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_233624.1 | |tss_id=hg_233624.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id=E9PK17 |
}} | }} | ||
Revision as of 12:51, 17 June 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 7513752 |
|---|---|
| End of the center position in the TSS region: | 7513753 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | ENST00000528947.5 |
|---|---|
| Distance: | 15 |
| Num_trans: | 13 |
| All_trans: | ENST00000528947.5:15 BC021714:69 ENST00000299492.9:246 NR_147792:246 NM_003621:246 NM_001351862:246 NM_001351856:246 NM_001351854:246 NM_001351853:246 NM_001351855:246 AK308398:246 AK001131:246 ENST00000526873.5:-455 |
TATA-Box annotation
| Distance to TSS: | 1866 |
|---|---|
| Nearest PromoterID: | NR_104178 |
| Entrez ID: | 100128494 |
| Nearest Unigene: | Hs.713607 |
| Nearest Refseq: | NR_104178 |
| Nearest Ensembl: | ENSG00000251143 |
| Gene Name: | PPFIA binding protein 2 |
| Gene Alias: | - |
| Gene Description: | uncharacterized LOC100128494 |
| Gene Type: | ncRNA |
| CpG%: | 0.015 |
| GC%: | 0.567164 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
