Difference between revisions of "TSS:Hg 233662.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |all_trans=BC007573:0 AK056066:0 ENST00000524867.1:1 BC062314:-2 ENST00000530797.5:-5 AK311954:-21 AK130959:-21 M17887:-21 ENST00000321153.9:-22 NM_001004:-22 D28411:-22 BC005920:-22 ENST00000532004.5:-24 BC005354:-24 KJ892048:232 CR542248:233 CR542212:233 ENST00000530398.1:267 ENST00000526222.5:396 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.025 | |cpg_percent=0.025 | ||
| − | |distance= | + | |distance=0 |
| − | |distance_to_tss= | + | |distance_to_tss=33 |
|end=7576800 | |end=7576800 | ||
|end_of_center_position=809996 | |end_of_center_position=809996 | ||
| Line 11: | Line 11: | ||
|gene_alias=Cclp1 | |gene_alias=Cclp1 | ||
|gene_description=PPFIA binding protein 2 | |gene_description=PPFIA binding protein 2 | ||
| − | |gene_id= | + | |gene_id=6181 |
| − | |gene_name= | + | |gene_name=ribosomal protein lateral stalk subunit P2 |
| − | |gene_source=HGNC: | + | |gene_source=HGNC:10377 |
| − | |gene_symbol= | + | |gene_symbol=RPLP2 |
| − | |gene_synonyms= | + | |gene_synonyms=LP2 MGC71408 P2 RPP2 |
|gene_type=protein-coding | |gene_type=protein-coding | ||
| − | |hgnc_mgi_id=HGNC: | + | |hgnc_mgi_id=HGNC:10377 |
|nearest_ensembl=ENSG00000166387 | |nearest_ensembl=ENSG00000166387 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001351857 |
|nearest_refseq=NM_003621 | |nearest_refseq=NM_003621 | ||
|nearest_unigene=Hs.655714 | |nearest_unigene=Hs.655714 | ||
| − | |num_trans= | + | |num_trans=19 |
|species=human | |species=human | ||
|start=7576799 | |start=7576799 | ||
|start_of_center_position=809995 | |start_of_center_position=809995 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name=BC007573 AK056066 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_233662.1 | |tss_id=hg_233662.1 | ||
Revision as of 12:52, 17 June 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 809995 |
|---|---|
| End of the center position in the TSS region: | 809996 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | BC007573 AK056066 |
|---|---|
| Distance: | 0 |
| Num_trans: | 19 |
| All_trans: | BC007573:0 AK056066:0 ENST00000524867.1:1 BC062314:-2 ENST00000530797.5:-5 AK311954:-21 AK130959:-21 M17887:-21 ENST00000321153.9:-22 NM_001004:-22 D28411:-22 BC005920:-22 ENST00000532004.5:-24 BC005354:-24 KJ892048:232 CR542248:233 CR542212:233 ENST00000530398.1:267 ENST00000526222.5:396 |
TATA-Box annotation
| Distance to TSS: | 33 |
|---|---|
| Nearest PromoterID: | NM_001351857 |
| Entrez ID: | 8495 |
| Nearest Unigene: | Hs.655714 |
| Nearest Refseq: | NM_003621 |
| Nearest Ensembl: | ENSG00000166387 |
| Gene Name: | ribosomal protein lateral stalk subunit P2 |
| Gene Alias: | Cclp1 |
| Gene Description: | PPFIA binding protein 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.025 |
| GC%: | 0.587065 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
