Difference between revisions of "TSS:Hg 233664.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |all_trans=ENST00000530398.1:-26 CR542248:-60 CR542212:-60 KJ892048:-61 ENST00000526222.5:84 ENST00000524867.1:-292 AK056066:-298 BC007573:-304 BC062314:-308 ENST00000530797.5:-311 AK311954:-327 AK130959:-327 M17887:-327 ENST00000321153.9:-328 NM_001004:-328 D28411:-328 BC005920:-328 ENST00000532004.5:-330 BC005354:-330 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.145 | |cpg_percent=0.145 | ||
| − | |distance= | + | |distance=-26 |
| − | |distance_to_tss=- | + | |distance_to_tss=-277 |
|end=7673777 | |end=7673777 | ||
|end_of_center_position=810305 | |end_of_center_position=810305 | ||
| Line 11: | Line 11: | ||
|gene_alias=B5R.2 | |gene_alias=B5R.2 | ||
|gene_description=cytochrome b5 reductase 2 | |gene_description=cytochrome b5 reductase 2 | ||
| − | |gene_id= | + | |gene_id=6181 |
| − | |gene_name= | + | |gene_name=ribosomal protein lateral stalk subunit P2 |
| − | |gene_source=HGNC: | + | |gene_source=HGNC:10377 |
| − | |gene_symbol= | + | |gene_symbol=RPLP2 |
| − | |gene_synonyms= | + | |gene_synonyms=LP2 MGC71408 P2 RPP2 |
|gene_type=protein-coding | |gene_type=protein-coding | ||
| − | |hgnc_mgi_id=HGNC: | + | |hgnc_mgi_id=HGNC:10377 |
|nearest_ensembl=ENSG00000166394 | |nearest_ensembl=ENSG00000166394 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_016229 |
|nearest_refseq=NM_016229 | |nearest_refseq=NM_016229 | ||
|nearest_unigene=Hs.414362 | |nearest_unigene=Hs.414362 | ||
| − | |num_trans= | + | |num_trans=19 |
|species=human | |species=human | ||
|start=7673776 | |start=7673776 | ||
|start_of_center_position=810304 | |start_of_center_position=810304 | ||
|strand=- | |strand=- | ||
| − | |tata_box= | + | |tata_box=77(GTGTATTTATGG,-,0.00) |
| − | |transcript_name= | + | |transcript_name=ENST00000530398.1 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_233664.1 | |tss_id=hg_233664.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id=H0YDD8 |
}} | }} | ||
Revision as of 12:52, 17 June 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 810304 |
|---|---|
| End of the center position in the TSS region: | 810305 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000530398.1 |
|---|---|
| Distance: | -26 |
| Num_trans: | 19 |
| All_trans: | ENST00000530398.1:-26 CR542248:-60 CR542212:-60 KJ892048:-61 ENST00000526222.5:84 ENST00000524867.1:-292 AK056066:-298 BC007573:-304 BC062314:-308 ENST00000530797.5:-311 AK311954:-327 AK130959:-327 M17887:-327 ENST00000321153.9:-328 NM_001004:-328 D28411:-328 BC005920:-328 ENST00000532004.5:-330 BC005354:-330 |
TATA-Box annotation
| Distance to TSS: | -277 |
|---|---|
| Nearest PromoterID: | NM_016229 |
| Entrez ID: | 51700 |
| Nearest Unigene: | Hs.414362 |
| Nearest Refseq: | NM_016229 |
| Nearest Ensembl: | ENSG00000166394 |
| Gene Name: | ribosomal protein lateral stalk subunit P2 |
| Gene Alias: | B5R.2 |
| Gene Description: | cytochrome b5 reductase 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.145 |
| GC%: | 0.716418 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | 77(GTGTATTTATGG,-,0.00) |
