Difference between revisions of "TSS:Hg 233697.1"
From referenceTSS
| Line 3: | Line 3: | ||
|P2= | |P2= | ||
|RPP2= | |RPP2= | ||
| − | |all_trans= | + | |all_trans=NM_001105518:130 ENST00000367501.7:150 AK127980:192 BC030781:229 ENST00000367500.9:237 NM_017673:237 AK315802:263 AK291443:363 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.105 | |cpg_percent=0.105 | ||
| − | |distance= | + | |distance=130 |
| − | |distance_to_tss= | + | |distance_to_tss=337 |
|end=810314 | |end=810314 | ||
|end_of_center_position=185156923 | |end_of_center_position=185156923 | ||
|entrez_id=6181 | |entrez_id=6181 | ||
|gc_percent=0.696517 | |gc_percent=0.696517 | ||
| − | |gene_alias=D11S2243E | + | |gene_alias=D11S2243E{{!}}LP2{{!}}P2{{!}}RPP2 |
|gene_description=ribosomal protein lateral stalk subunit P2 | |gene_description=ribosomal protein lateral stalk subunit P2 | ||
| − | |gene_id= | + | |gene_id=54823 |
| − | |gene_name= | + | |gene_name=SWT1 RNA endoribonuclease homolog |
| − | |gene_source=HGNC: | + | |gene_source=HGNC:16785 |
| − | |gene_symbol= | + | |gene_symbol=SWT1 |
| − | |gene_synonyms= | + | |gene_synonyms=FLJ20121 HsSwt1 |
|gene_type=protein-coding | |gene_type=protein-coding | ||
| − | |hgnc_mgi_id=HGNC: | + | |hgnc_mgi_id=HGNC:16785 |
|nearest_ensembl=ENSG00000177600 | |nearest_ensembl=ENSG00000177600 | ||
|nearest_promoter_id=NM_001004 | |nearest_promoter_id=NM_001004 | ||
|nearest_refseq=NM_001004 | |nearest_refseq=NM_001004 | ||
|nearest_unigene=Hs.437594 | |nearest_unigene=Hs.437594 | ||
| − | |num_trans= | + | |num_trans=8 |
|species=human | |species=human | ||
|start=810294 | |start=810294 | ||
|start_of_center_position=185156922 | |start_of_center_position=185156922 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name=NM_001105518 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_233697.1 | |tss_id=hg_233697.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id=Q5T5J6 |
}} | }} | ||
Revision as of 12:53, 17 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 185156922 |
|---|---|
| End of the center position in the TSS region: | 185156923 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | NM_001105518 |
|---|---|
| Distance: | 130 |
| Num_trans: | 8 |
| All_trans: | NM_001105518:130 ENST00000367501.7:150 AK127980:192 BC030781:229 ENST00000367500.9:237 NM_017673:237 AK315802:263 AK291443:363 |
TATA-Box annotation
| Distance to TSS: | 337 |
|---|---|
| Nearest PromoterID: | NM_001004 |
| Entrez ID: | 6181 |
| Nearest Unigene: | Hs.437594 |
| Nearest Refseq: | NM_001004 |
| Nearest Ensembl: | ENSG00000177600 |
| Gene Name: | SWT1 RNA endoribonuclease homolog |
| Gene Alias: | D11S2243E|LP2|P2|RPP2 |
| Gene Description: | ribosomal protein lateral stalk subunit P2 |
| Gene Type: | protein-coding |
| CpG%: | 0.105 |
| GC%: | 0.696517 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
