Difference between revisions of "TSS:Hg 233698.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=ENST00000367501.7:9 NM_001105518:-11 AK127980:51 BC030781:88 ENST00000367500.9:96 NM_017673:96 AK315802:122 AK291443:222 ENST00000450350.1:411 | ||
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.01 | |cpg_percent=0.01 | ||
| − | |distance= | + | |distance=9 |
|distance_to_tss=-317570 | |distance_to_tss=-317570 | ||
|end=81080374 | |end=81080374 | ||
| Line 9: | Line 10: | ||
|gc_percent=0.308458 | |gc_percent=0.308458 | ||
|gene_alias=- | |gene_alias=- | ||
| − | |gene_description= | + | |gene_description=long intergenic non-protein coding RNA 2720 |
| − | |gene_name= | + | |gene_id=54823 |
| + | |gene_name=SWT1 RNA endoribonuclease homolog | ||
| + | |gene_source=HGNC:16785 | ||
| + | |gene_symbol=SWT1 | ||
| + | |gene_synonyms=FLJ20121 HsSwt1 | ||
|gene_type=ncRNA | |gene_type=ncRNA | ||
| + | |hgnc_mgi_id=HGNC:16785 | ||
|nearest_ensembl=ENSG00000255178 | |nearest_ensembl=ENSG00000255178 | ||
|nearest_promoter_id=NR_120570 | |nearest_promoter_id=NR_120570 | ||
|nearest_refseq=NR_120570 | |nearest_refseq=NR_120570 | ||
|nearest_unigene=Hs.547927 | |nearest_unigene=Hs.547927 | ||
| − | |num_trans= | + | |num_trans=9 |
|species=human | |species=human | ||
|start=81080372 | |start=81080372 | ||
|start_of_center_position=185157070 | |start_of_center_position=185157070 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name=ENST00000367501.7 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_233698.1 | |tss_id=hg_233698.1 | ||
|tss_score=1 | |tss_score=1 | ||
| + | |uniprot_id=Q5T5J6 | ||
}} | }} | ||
Revision as of 12:53, 17 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 185157070 |
|---|---|
| End of the center position in the TSS region: | 185157071 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000367501.7 |
|---|---|
| Distance: | 9 |
| Num_trans: | 9 |
| All_trans: | ENST00000367501.7:9 NM_001105518:-11 AK127980:51 BC030781:88 ENST00000367500.9:96 NM_017673:96 AK315802:122 AK291443:222 ENST00000450350.1:411 |
TATA-Box annotation
| Distance to TSS: | -317570 |
|---|---|
| Nearest PromoterID: | NR_120570 |
| Entrez ID: | 101928944 |
| Nearest Unigene: | Hs.547927 |
| Nearest Refseq: | NR_120570 |
| Nearest Ensembl: | ENSG00000255178 |
| Gene Name: | SWT1 RNA endoribonuclease homolog |
| Gene Alias: | - |
| Gene Description: | long intergenic non-protein coding RNA 2720 |
| Gene Type: | ncRNA |
| CpG%: | 0.01 |
| GC%: | 0.308458 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
