Difference between revisions of "TSS:Hg 233731.1"
From referenceTSS
| Line 3: | Line 3: | ||
|MSTP070= | |MSTP070= | ||
|TRM1L= | |TRM1L= | ||
| − | |all_trans= | + | |all_trans=ENST00000528319.1:2 LP764882:2 AK057189:2 NM_001143837:56 |
|bG120K12.3= | |bG120K12.3= | ||
|chr=chr1 | |chr=chr1 | ||
|cpg_percent=0.07 | |cpg_percent=0.07 | ||
| − | |distance= | + | |distance=2 |
| − | |distance_to_tss= | + | |distance_to_tss=31 |
|end=185156930 | |end=185156930 | ||
|end_of_center_position=89589613 | |end_of_center_position=89589613 | ||
|entrez_id=81627 | |entrez_id=81627 | ||
|gc_percent=0.552239 | |gc_percent=0.552239 | ||
| − | |gene_alias=C1orf25 | + | |gene_alias=C1orf25{{!}}MST070{{!}}MSTP070{{!}}TRM1L{{!}}bG120K12.3 |
|gene_description=tRNA methyltransferase 1 like | |gene_description=tRNA methyltransferase 1 like | ||
| − | |gene_id= | + | |gene_id=50507 |
| − | |gene_name= | + | |gene_name=NADPH oxidase 4 |
| − | |gene_source=HGNC: | + | |gene_source=HGNC:7891 |
| − | |gene_symbol= | + | |gene_symbol=NOX4 |
| − | |gene_synonyms= | + | |gene_synonyms=KOX KOX-1 |
|gene_type=protein-coding | |gene_type=protein-coding | ||
| − | |hgnc_mgi_id=HGNC: | + | |hgnc_mgi_id=HGNC:7891 |
|nearest_ensembl=ENSG00000121486 | |nearest_ensembl=ENSG00000121486 | ||
|nearest_promoter_id=NM_030934 | |nearest_promoter_id=NM_030934 | ||
|nearest_refseq=NM_030934 | |nearest_refseq=NM_030934 | ||
|nearest_unigene=Hs.107149 | |nearest_unigene=Hs.107149 | ||
| − | |num_trans= | + | |num_trans=4 |
|species=human | |species=human | ||
|start=185156914 | |start=185156914 | ||
|start_of_center_position=89589612 | |start_of_center_position=89589612 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name=ENST00000528319.1 LP764882 AK057189 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_233731.1 | |tss_id=hg_233731.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id=B3KQ17 |
}} | }} | ||
Revision as of 12:54, 17 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 89589612 |
|---|---|
| End of the center position in the TSS region: | 89589613 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000528319.1 LP764882 AK057189 |
|---|---|
| Distance: | 2 |
| Num_trans: | 4 |
| All_trans: | ENST00000528319.1:2 LP764882:2 AK057189:2 NM_001143837:56 |
TATA-Box annotation
| Distance to TSS: | 31 |
|---|---|
| Nearest PromoterID: | NM_030934 |
| Entrez ID: | 81627 |
| Nearest Unigene: | Hs.107149 |
| Nearest Refseq: | NM_030934 |
| Nearest Ensembl: | ENSG00000121486 |
| Gene Name: | NADPH oxidase 4 |
| Gene Alias: | C1orf25|MST070|MSTP070|TRM1L|bG120K12.3 |
| Gene Description: | tRNA methyltransferase 1 like |
| Gene Type: | protein-coding |
| CpG%: | 0.07 |
| GC%: | 0.552239 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
