Difference between revisions of "TSS:Hg 233751.1"
From referenceTSS
| Line 5: | Line 5: | ||
|PGHS-2= | |PGHS-2= | ||
|PHS-2= | |PHS-2= | ||
| − | |all_trans= | + | |all_trans=ENST00000264202.8:16 ENST00000459967.6:16 NM_004930:16 NM_001206541:16 NM_001206540:16 NM_001313932:16 ENST00000482808.2:18 ENST00000375144.6:18 ENST00000674432.1:18 ENST00000264203.7:42 AK125085:42 BC107752:68 ENST00000375142.5:70 ENST00000674449.1:78 AK313113:78 |
|chr=chr1 | |chr=chr1 | ||
|cpg_percent=0.065 | |cpg_percent=0.065 | ||
| − | |distance= | + | |distance=16 |
| − | |distance_to_tss= | + | |distance_to_tss=26 |
|end=186680401 | |end=186680401 | ||
|end_of_center_position=19485557 | |end_of_center_position=19485557 | ||
|entrez_id=5743 | |entrez_id=5743 | ||
|gc_percent=0.562189 | |gc_percent=0.562189 | ||
| − | |gene_alias=COX-2 | + | |gene_alias=COX-2{{!}}COX2{{!}}GRIPGHS{{!}}PGG/HS{{!}}PGHS-2{{!}}PHS-2{{!}}hCox-2 |
|gene_description=prostaglandin-endoperoxide synthase 2 | |gene_description=prostaglandin-endoperoxide synthase 2 | ||
| − | |gene_id= | + | |gene_id=832 |
| − | |gene_name= | + | |gene_name=capping actin protein of muscle Z-line subunit beta |
| − | |gene_source=HGNC: | + | |gene_source=HGNC:1491 |
| − | |gene_symbol= | + | |gene_symbol=CAPZB |
| − | |gene_synonyms= | + | |gene_synonyms= |
|gene_type=protein-coding | |gene_type=protein-coding | ||
|hCox-2= | |hCox-2= | ||
| − | |hgnc_mgi_id=HGNC: | + | |hgnc_mgi_id=HGNC:1491 |
|nearest_ensembl=ENSG00000073756 | |nearest_ensembl=ENSG00000073756 | ||
|nearest_promoter_id=NM_000963 | |nearest_promoter_id=NM_000963 | ||
|nearest_refseq=NM_000963 | |nearest_refseq=NM_000963 | ||
|nearest_unigene=Hs.196384 | |nearest_unigene=Hs.196384 | ||
| − | |num_trans= | + | |num_trans=15 |
|species=human | |species=human | ||
|start=186680392 | |start=186680392 | ||
|start_of_center_position=19485556 | |start_of_center_position=19485556 | ||
|strand=+ | |strand=+ | ||
| − | |tata_box= | + | |tata_box=50(CTTTTTATAAGA,+,0.00) |
| − | |transcript_name= | + | |transcript_name=ENST00000264202.8 ENST00000459967.6 NM_004930 NM_001206541 NM_001206540 NM_001313932 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_233751.1 | |tss_id=hg_233751.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id=A0A384MR50 B1AK85 Q7L4N0 |
}} | }} | ||
Revision as of 12:54, 17 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 19485556 |
|---|---|
| End of the center position in the TSS region: | 19485557 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000264202.8 ENST00000459967.6 NM_004930 NM_001206541 NM_001206540 NM_001313932 |
|---|---|
| Distance: | 16 |
| Num_trans: | 15 |
| All_trans: | ENST00000264202.8:16 ENST00000459967.6:16 NM_004930:16 NM_001206541:16 NM_001206540:16 NM_001313932:16 ENST00000482808.2:18 ENST00000375144.6:18 ENST00000674432.1:18 ENST00000264203.7:42 AK125085:42 BC107752:68 ENST00000375142.5:70 ENST00000674449.1:78 AK313113:78 |
TATA-Box annotation
| Distance to TSS: | 26 |
|---|---|
| Nearest PromoterID: | NM_000963 |
| Entrez ID: | 5743 |
| Nearest Unigene: | Hs.196384 |
| Nearest Refseq: | NM_000963 |
| Nearest Ensembl: | ENSG00000073756 |
| Gene Name: | capping actin protein of muscle Z-line subunit beta |
| Gene Alias: | COX-2|COX2|GRIPGHS|PGG/HS|PGHS-2|PHS-2|hCox-2 |
| Gene Description: | prostaglandin-endoperoxide synthase 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.065 |
| GC%: | 0.562189 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | 50(CTTTTTATAAGA,+,0.00) |
