Difference between revisions of "TSS:Hg 234420.1"
From referenceTSS
| Line 6: | Line 6: | ||
|KRT1A= | |KRT1A= | ||
|NEPPK= | |NEPPK= | ||
| + | |all_trans=AK298176:9 BC009600:9 GQ900890:9 ENST00000547708.5:10 ENST00000547566.5:10 AK303303:10 AK308679:10 AK129814:10 X06747:10 BC070315:10 ENST00000679228.1:11 ENST00000679101.1:-12 ENST00000340913.11:-12 NM_002136:-12 NR_135167:-12 NM_031157:-12 AK291113:12 ENST00000547870.2:18 BC071945:20 ENST00000551702.5:25 BC078165:25 BC121133:26 BC073162:26 BC074502:28 BC002355:31 BC033714:31 ENST00000550482.2:-34 ENST00000676794.1:37 ENST00000330752.12:37 ENST00000678365.1:37 ENST00000678418.1:-40 ENST00000676725.1:-40 BC052296:40 ENST00000678690.1:42 ENST00000678919.1:42 ENST00000547276.5:42 BC020442:42 BC103707:42 X79536:44 ENST00000677249.1:-47 BC012158:49 U00947:62 AB463728:69 KJ891371:69 ENST00000677220.1:70 CU677924:72 ENST00000677375.1:-75 ENST00000677210.1:-75 ENST00000677385.1:-75 ENST00000678077.1:134 ENST00000548688.5:268 | ||
|chr=chr12 | |chr=chr12 | ||
|cpg_percent=0.03 | |cpg_percent=0.03 | ||
| − | |distance= | + | |distance=9 |
|distance_to_tss=4673 | |distance_to_tss=4673 | ||
|end=52675741 | |end=52675741 | ||
| Line 14: | Line 15: | ||
|entrez_id=3848 | |entrez_id=3848 | ||
|gc_percent=0.497512 | |gc_percent=0.497512 | ||
| − | |gene_alias=CK1 | + | |gene_alias=CK1{{!}}EHK{{!}}EHK1{{!}}EPPK{{!}}K1{{!}}KRT1A{{!}}NEPPK |
|gene_description=keratin 1 | |gene_description=keratin 1 | ||
| − | |gene_name= | + | |gene_id=3178 |
| + | |gene_name=heterogeneous nuclear ribonucleoprotein A1 | ||
| + | |gene_source=HGNC:5031 | ||
| + | |gene_symbol=HNRNPA1 | ||
| + | |gene_synonyms=ALS20 hnRNP-A1 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:5031 | ||
|nearest_ensembl=ENSG00000167768 | |nearest_ensembl=ENSG00000167768 | ||
|nearest_promoter_id=NM_006121 | |nearest_promoter_id=NM_006121 | ||
|nearest_refseq=NM_006121 | |nearest_refseq=NM_006121 | ||
|nearest_unigene=Hs.80828 | |nearest_unigene=Hs.80828 | ||
| − | |num_trans= | + | |num_trans=51 |
|species=human | |species=human | ||
|start=52675726 | |start=52675726 | ||
|start_of_center_position=54280737 | |start_of_center_position=54280737 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name=AK298176 BC009600 GQ900890 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_234420.1 | |tss_id=hg_234420.1 | ||
|tss_score=1 | |tss_score=1 | ||
| + | |uniprot_id=B4DP35 | ||
}} | }} | ||
Revision as of 13:10, 17 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 54280737 |
|---|---|
| End of the center position in the TSS region: | 54280738 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | AK298176 BC009600 GQ900890 |
|---|---|
| Distance: | 9 |
| Num_trans: | 51 |
| All_trans: | AK298176:9 BC009600:9 GQ900890:9 ENST00000547708.5:10 ENST00000547566.5:10 AK303303:10 AK308679:10 AK129814:10 X06747:10 BC070315:10 ENST00000679228.1:11 ENST00000679101.1:-12 ENST00000340913.11:-12 NM_002136:-12 NR_135167:-12 NM_031157:-12 AK291113:12 ENST00000547870.2:18 BC071945:20 ENST00000551702.5:25 BC078165:25 BC121133:26 BC073162:26 BC074502:28 BC002355:31 BC033714:31 ENST00000550482.2:-34 ENST00000676794.1:37 ENST00000330752.12:37 ENST00000678365.1:37 ENST00000678418.1:-40 ENST00000676725.1:-40 BC052296:40 ENST00000678690.1:42 ENST00000678919.1:42 ENST00000547276.5:42 BC020442:42 BC103707:42 X79536:44 ENST00000677249.1:-47 BC012158:49 U00947:62 AB463728:69 KJ891371:69 ENST00000677220.1:70 CU677924:72 ENST00000677375.1:-75 ENST00000677210.1:-75 ENST00000677385.1:-75 ENST00000678077.1:134 ENST00000548688.5:268 |
TATA-Box annotation
| Distance to TSS: | 4673 |
|---|---|
| Nearest PromoterID: | NM_006121 |
| Entrez ID: | 3848 |
| Nearest Unigene: | Hs.80828 |
| Nearest Refseq: | NM_006121 |
| Nearest Ensembl: | ENSG00000167768 |
| Gene Name: | heterogeneous nuclear ribonucleoprotein A1 |
| Gene Alias: | CK1|EHK|EHK1|EPPK|K1|KRT1A|NEPPK |
| Gene Description: | keratin 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.03 |
| GC%: | 0.497512 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
