Difference between revisions of "TSS:Hg 234421.1"
From referenceTSS
| Line 6: | Line 6: | ||
|KRT1A= | |KRT1A= | ||
|NEPPK= | |NEPPK= | ||
| + | |all_trans=ENST00000547708.5:0 ENST00000547566.5:0 ENST00000679228.1:0 AK298176:0 BC009600:0 GQ900890:0 AK303303:0 AK308679:0 AK129814:0 X06747:0 BC070315:0 AK291113:0 ENST00000547870.2:3 BC071945:5 ENST00000551702.5:10 BC078165:10 BC121133:11 BC073162:11 BC074502:13 BC002355:16 BC033714:16 ENST00000679101.1:-18 ENST00000340913.11:-18 NM_002136:-18 NR_135167:-18 NM_031157:-18 ENST00000676794.1:22 ENST00000330752.12:22 ENST00000678365.1:22 BC052296:25 ENST00000678690.1:27 ENST00000678919.1:27 ENST00000547276.5:27 BC020442:27 BC103707:27 X79536:29 BC012158:34 ENST00000550482.2:-40 ENST00000678418.1:-46 ENST00000676725.1:-46 U00947:47 ENST00000677249.1:-53 AB463728:54 KJ891371:54 ENST00000677220.1:55 CU677924:57 ENST00000677375.1:-81 ENST00000677210.1:-81 ENST00000677385.1:-81 ENST00000678077.1:119 ENST00000548688.5:253 | ||
|chr=chr12 | |chr=chr12 | ||
|cpg_percent=0.01 | |cpg_percent=0.01 | ||
| − | |distance= | + | |distance=0 |
|distance_to_tss=2201 | |distance_to_tss=2201 | ||
|end=52678211 | |end=52678211 | ||
| Line 14: | Line 15: | ||
|entrez_id=3848 | |entrez_id=3848 | ||
|gc_percent=0.412935 | |gc_percent=0.412935 | ||
| − | |gene_alias=CK1 | + | |gene_alias=CK1{{!}}EHK{{!}}EHK1{{!}}EPPK{{!}}K1{{!}}KRT1A{{!}}NEPPK |
|gene_description=keratin 1 | |gene_description=keratin 1 | ||
| − | |gene_name= | + | |gene_id=3178 |
| + | |gene_name=heterogeneous nuclear ribonucleoprotein A1 | ||
| + | |gene_source=HGNC:5031 | ||
| + | |gene_symbol=HNRNPA1 | ||
| + | |gene_synonyms=ALS20 hnRNP-A1 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:5031 | ||
|nearest_ensembl=ENSG00000167768 | |nearest_ensembl=ENSG00000167768 | ||
|nearest_promoter_id=NM_006121 | |nearest_promoter_id=NM_006121 | ||
|nearest_refseq=NM_006121 | |nearest_refseq=NM_006121 | ||
|nearest_unigene=Hs.80828 | |nearest_unigene=Hs.80828 | ||
| − | |num_trans= | + | |num_trans=51 |
|species=human | |species=human | ||
|start=52678200 | |start=52678200 | ||
|start_of_center_position=54280748 | |start_of_center_position=54280748 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name=ENST00000547708.5 ENST00000547566.5 ENST00000679228.1 AK298176 BC009600 GQ900890 AK303303 AK308679 AK129814 X06747 BC070315 AK291113 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_234421.1 | |tss_id=hg_234421.1 | ||
|tss_score=1 | |tss_score=1 | ||
| + | |uniprot_id=A0A024RB53 B4DP35 B4E0B5 F8W646 | ||
}} | }} | ||
Revision as of 13:10, 17 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 54280748 |
|---|---|
| End of the center position in the TSS region: | 54280749 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000547708.5 ENST00000547566.5 ENST00000679228.1 AK298176 BC009600 GQ900890 AK303303 AK308679 AK129814 X06747 BC070315 AK291113 |
|---|---|
| Distance: | 0 |
| Num_trans: | 51 |
| All_trans: | ENST00000547708.5:0 ENST00000547566.5:0 ENST00000679228.1:0 AK298176:0 BC009600:0 GQ900890:0 AK303303:0 AK308679:0 AK129814:0 X06747:0 BC070315:0 AK291113:0 ENST00000547870.2:3 BC071945:5 ENST00000551702.5:10 BC078165:10 BC121133:11 BC073162:11 BC074502:13 BC002355:16 BC033714:16 ENST00000679101.1:-18 ENST00000340913.11:-18 NM_002136:-18 NR_135167:-18 NM_031157:-18 ENST00000676794.1:22 ENST00000330752.12:22 ENST00000678365.1:22 BC052296:25 ENST00000678690.1:27 ENST00000678919.1:27 ENST00000547276.5:27 BC020442:27 BC103707:27 X79536:29 BC012158:34 ENST00000550482.2:-40 ENST00000678418.1:-46 ENST00000676725.1:-46 U00947:47 ENST00000677249.1:-53 AB463728:54 KJ891371:54 ENST00000677220.1:55 CU677924:57 ENST00000677375.1:-81 ENST00000677210.1:-81 ENST00000677385.1:-81 ENST00000678077.1:119 ENST00000548688.5:253 |
TATA-Box annotation
| Distance to TSS: | 2201 |
|---|---|
| Nearest PromoterID: | NM_006121 |
| Entrez ID: | 3848 |
| Nearest Unigene: | Hs.80828 |
| Nearest Refseq: | NM_006121 |
| Nearest Ensembl: | ENSG00000167768 |
| Gene Name: | heterogeneous nuclear ribonucleoprotein A1 |
| Gene Alias: | CK1|EHK|EHK1|EPPK|K1|KRT1A|NEPPK |
| Gene Description: | keratin 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.01 |
| GC%: | 0.412935 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
