Difference between revisions of "TSS:Hg 234424.1"
From referenceTSS
| Line 4: | Line 4: | ||
|K4= | |K4= | ||
|WSN1= | |WSN1= | ||
| − | |all_trans= | + | |all_trans=ENST00000679319.1:0 ENST00000677224.1:0 ENST00000677279.1:0 ENST00000678513.1:0 ENST00000676707.1:0 ENST00000679063.1:0 ENST00000678279.1:0 ENST00000677539.1:0 ENST00000677191.1:0 ENST00000678456.1:0 ENST00000676572.1:0 ENST00000679344.1:0 ENST00000678212.1:0 ENST00000677778.1:0 ENST00000678347.1:-224 ENST00000678876.1:-224 ENST00000677945.1:-224 ENST00000678934.1:-224 ENST00000678597.1:-224 ENST00000678873.1:-224 ENST00000677488.1:265 ENST00000678947.1:265 ENST00000676472.1:265 ENST00000678611.1:265 ENST00000676951.1:265 ENST00000676853.1:265 ENST00000678424.1:265 ENST00000678581.1:265 ENST00000678970.1:265 ENST00000676886.1:265 ENST00000678412.1:265 ENST00000679079.1:265 BC035253:-369 ENST00000677291.1:-403 ENST00000677645.1:-403 ENST00000677636.1:-403 |
|chr=chr12 | |chr=chr12 | ||
|cpg_percent=0.02 | |cpg_percent=0.02 | ||
| − | |distance= | + | |distance=0 |
|distance_to_tss=7022 | |distance_to_tss=7022 | ||
|end=52807098 | |end=52807098 | ||
| Line 13: | Line 13: | ||
|entrez_id=3851 | |entrez_id=3851 | ||
|gc_percent=0.572139 | |gc_percent=0.572139 | ||
| − | |gene_alias=CK-4 | + | |gene_alias=CK-4{{!}}CK4{{!}}CYK4{{!}}K4{{!}}WSN1 |
|gene_description=keratin 4 | |gene_description=keratin 4 | ||
| − | |gene_name= | + | |gene_id=3178 |
| + | |gene_name=heterogeneous nuclear ribonucleoprotein A1 | ||
| + | |gene_source=HGNC:5031 | ||
| + | |gene_symbol=HNRNPA1 | ||
| + | |gene_synonyms=ALS20 hnRNP-A1 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:5031 | ||
|nearest_ensembl=ENSG00000170477 | |nearest_ensembl=ENSG00000170477 | ||
|nearest_promoter_id=NM_002272 | |nearest_promoter_id=NM_002272 | ||
|nearest_refseq=NM_002272 | |nearest_refseq=NM_002272 | ||
|nearest_unigene=Hs.654610 | |nearest_unigene=Hs.654610 | ||
| − | |num_trans= | + | |num_trans=36 |
|species=human | |species=human | ||
|start=52807089 | |start=52807089 | ||
|start_of_center_position=54282805 | |start_of_center_position=54282805 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name=ENST00000679319.1 ENST00000677224.1 ENST00000677279.1 ENST00000678513.1 ENST00000676707.1 ENST00000679063.1 ENST00000678279.1 ENST00000677539.1 ENST00000677191.1 ENST00000678456.1 ENST00000676572.1 ENST00000679344.1 ENST00000678212.1 ENST00000677778.1 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_234424.1 | |tss_id=hg_234424.1 | ||
|tss_score=1 | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Revision as of 13:10, 17 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 54282805 |
|---|---|
| End of the center position in the TSS region: | 54282806 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000679319.1 ENST00000677224.1 ENST00000677279.1 ENST00000678513.1 ENST00000676707.1 ENST00000679063.1 ENST00000678279.1 ENST00000677539.1 ENST00000677191.1 ENST00000678456.1 ENST00000676572.1 ENST00000679344.1 ENST00000678212.1 ENST00000677778.1 |
|---|---|
| Distance: | 0 |
| Num_trans: | 36 |
| All_trans: | ENST00000679319.1:0 ENST00000677224.1:0 ENST00000677279.1:0 ENST00000678513.1:0 ENST00000676707.1:0 ENST00000679063.1:0 ENST00000678279.1:0 ENST00000677539.1:0 ENST00000677191.1:0 ENST00000678456.1:0 ENST00000676572.1:0 ENST00000679344.1:0 ENST00000678212.1:0 ENST00000677778.1:0 ENST00000678347.1:-224 ENST00000678876.1:-224 ENST00000677945.1:-224 ENST00000678934.1:-224 ENST00000678597.1:-224 ENST00000678873.1:-224 ENST00000677488.1:265 ENST00000678947.1:265 ENST00000676472.1:265 ENST00000678611.1:265 ENST00000676951.1:265 ENST00000676853.1:265 ENST00000678424.1:265 ENST00000678581.1:265 ENST00000678970.1:265 ENST00000676886.1:265 ENST00000678412.1:265 ENST00000679079.1:265 BC035253:-369 ENST00000677291.1:-403 ENST00000677645.1:-403 ENST00000677636.1:-403 |
TATA-Box annotation
| Distance to TSS: | 7022 |
|---|---|
| Nearest PromoterID: | NM_002272 |
| Entrez ID: | 3851 |
| Nearest Unigene: | Hs.654610 |
| Nearest Refseq: | NM_002272 |
| Nearest Ensembl: | ENSG00000170477 |
| Gene Name: | heterogeneous nuclear ribonucleoprotein A1 |
| Gene Alias: | CK-4|CK4|CYK4|K4|WSN1 |
| Gene Description: | keratin 4 |
| Gene Type: | protein-coding |
| CpG%: | 0.02 |
| GC%: | 0.572139 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
