Difference between revisions of "TSS:Hg 234427.1"
From referenceTSS
Line 4: | Line 4: | ||
|K4= | |K4= | ||
|WSN1= | |WSN1= | ||
− | |all_trans= | + | |all_trans=ENST00000677518.1:-93 ENST00000677847.1:-93 ENST00000679026.1:-93 ENST00000677840.1:-93 ENST00000551679.1:-182 ENST00000678093.1:353 ENST00000679251.1:353 ENST00000678199.1:353 ENST00000676925.1:353 ENST00000677832.1:353 ENST00000677666.1:353 ENST00000677061.1:353 ENST00000677072.1:353 ENST00000676661.1:353 |
|chr=chr12 | |chr=chr12 | ||
|cpg_percent=0.015 | |cpg_percent=0.015 | ||
− | |distance=- | + | |distance=-93 |
|distance_to_tss=217 | |distance_to_tss=217 | ||
|end=52813899 | |end=52813899 | ||
Line 13: | Line 13: | ||
|entrez_id=3851 | |entrez_id=3851 | ||
|gc_percent=0.58209 | |gc_percent=0.58209 | ||
− | |gene_alias=CK-4 | + | |gene_alias=CK-4{{!}}CK4{{!}}CYK4{{!}}K4{{!}}WSN1 |
|gene_description=keratin 4 | |gene_description=keratin 4 | ||
− | |gene_name= | + | |gene_id=3178 |
+ | |gene_name=heterogeneous nuclear ribonucleoprotein A1 | ||
+ | |gene_source=HGNC:5031 | ||
+ | |gene_symbol=HNRNPA1 | ||
+ | |gene_synonyms=ALS20 hnRNP-A1 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
+ | |hgnc_mgi_id=HGNC:5031 | ||
|nearest_ensembl=ENSG00000170477 | |nearest_ensembl=ENSG00000170477 | ||
|nearest_promoter_id=NM_002272 | |nearest_promoter_id=NM_002272 | ||
|nearest_refseq=NM_002272 | |nearest_refseq=NM_002272 | ||
|nearest_unigene=Hs.654610 | |nearest_unigene=Hs.654610 | ||
− | |num_trans= | + | |num_trans=14 |
|species=human | |species=human | ||
|start=52813898 | |start=52813898 | ||
|start_of_center_position=54283904 | |start_of_center_position=54283904 | ||
|strand=- | |strand=- | ||
− | |transcript_name= | + | |transcript_name=ENST00000677518.1 ENST00000677847.1 ENST00000679026.1 ENST00000677840.1 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_234427.1 | |tss_id=hg_234427.1 | ||
|tss_score=1 | |tss_score=1 | ||
+ | |uniprot_id= | ||
}} | }} |
Revision as of 13:10, 17 June 2021
Basic information about the TSS
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Start of the center position in the TSS region: | 54283904 |
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End of the center position in the TSS region: | 54283905 |
Gene and protein annotation
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Transcript annotation
Transcript_name: | ENST00000677518.1 ENST00000677847.1 ENST00000679026.1 ENST00000677840.1 |
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Distance: | -93 |
Num_trans: | 14 |
All_trans: | ENST00000677518.1:-93 ENST00000677847.1:-93 ENST00000679026.1:-93 ENST00000677840.1:-93 ENST00000551679.1:-182 ENST00000678093.1:353 ENST00000679251.1:353 ENST00000678199.1:353 ENST00000676925.1:353 ENST00000677832.1:353 ENST00000677666.1:353 ENST00000677061.1:353 ENST00000677072.1:353 ENST00000676661.1:353 |
TATA-Box annotation
Distance to TSS: | 217 |
---|---|
Nearest PromoterID: | NM_002272 |
Entrez ID: | 3851 |
Nearest Unigene: | Hs.654610 |
Nearest Refseq: | NM_002272 |
Nearest Ensembl: | ENSG00000170477 |
Gene Name: | heterogeneous nuclear ribonucleoprotein A1 |
Gene Alias: | CK-4|CK4|CYK4|K4|WSN1 |
Gene Description: | keratin 4 |
Gene Type: | protein-coding |
CpG%: | 0.015 |
GC%: | 0.58209 |
TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |