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Difference between revisions of "TSS:Hg 234427.1"

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Line 4: Line 4:
 
|K4=
 
|K4=
 
|WSN1=
 
|WSN1=
|all_trans=KJ901545:-160 EU832356:-161 EU832441:-161 CU692074:-161 X07695:175 BC042174:-180 X67683:-180 BC012867:-205 ENST00000548097.5:-217 ENST00000552668.1:-217 NM_002272:-217 uc058oio.1:-217 uc058oiq.1:-217 AK098110:-217 AK299451:-217 AK299394:-217 AK307941:-217 AK296582:-217 AK299400:-217 ENST00000551436.1:283 uc058oir.1:283
+
|all_trans=ENST00000677518.1:-93 ENST00000677847.1:-93 ENST00000679026.1:-93 ENST00000677840.1:-93 ENST00000551679.1:-182 ENST00000678093.1:353 ENST00000679251.1:353 ENST00000678199.1:353 ENST00000676925.1:353 ENST00000677832.1:353 ENST00000677666.1:353 ENST00000677061.1:353 ENST00000677072.1:353 ENST00000676661.1:353
 
|chr=chr12
 
|chr=chr12
 
|cpg_percent=0.015
 
|cpg_percent=0.015
|distance=-160
+
|distance=-93
 
|distance_to_tss=217
 
|distance_to_tss=217
 
|end=52813899
 
|end=52813899
Line 13: Line 13:
 
|entrez_id=3851
 
|entrez_id=3851
 
|gc_percent=0.58209
 
|gc_percent=0.58209
|gene_alias=CK-4
+
|gene_alias=CK-4{{!}}CK4{{!}}CYK4{{!}}K4{{!}}WSN1
 
|gene_description=keratin 4
 
|gene_description=keratin 4
|gene_name=KRT4
+
|gene_id=3178
 +
|gene_name=heterogeneous nuclear ribonucleoprotein A1
 +
|gene_source=HGNC:5031
 +
|gene_symbol=HNRNPA1
 +
|gene_synonyms=ALS20 hnRNP-A1
 
|gene_type=protein-coding
 
|gene_type=protein-coding
 +
|hgnc_mgi_id=HGNC:5031
 
|nearest_ensembl=ENSG00000170477
 
|nearest_ensembl=ENSG00000170477
 
|nearest_promoter_id=NM_002272
 
|nearest_promoter_id=NM_002272
 
|nearest_refseq=NM_002272
 
|nearest_refseq=NM_002272
 
|nearest_unigene=Hs.654610
 
|nearest_unigene=Hs.654610
|num_trans=21
+
|num_trans=14
 
|species=human
 
|species=human
 
|start=52813898
 
|start=52813898
 
|start_of_center_position=54283904
 
|start_of_center_position=54283904
 
|strand=-
 
|strand=-
|transcript_name=KJ901545
+
|transcript_name=ENST00000677518.1 ENST00000677847.1 ENST00000679026.1 ENST00000677840.1
 
|tss_classification=no
 
|tss_classification=no
 
|tss_id=hg_234427.1
 
|tss_id=hg_234427.1
 
|tss_score=1
 
|tss_score=1
 +
|uniprot_id=
 
}}
 
}}

Revision as of 13:10, 17 June 2021

Basic information about the TSS


TSS ID:hg_234427.1
Species:human
Chr:chr12
TSS Classification:no
Start:52813898
End:52813899
Strand:-
TSS Score:1
Start of the center position in the TSS region:54283904
End of the center position in the TSS region:54283905



Gene and protein annotation


Transcript_name:ENST00000677518.1 ENST00000677847.1 ENST00000679026.1 ENST00000677840.1
Distance:-93
GeneID:3178
HGNC/MGI_ID:HGNC:5031
UniProt_ID:
Gene_name:heterogeneous nuclear ribonucleoprotein A1
Gene_symbol:HNRNPA1
Gene_synonyms:ALS20 hnRNP-A1
Gene_source:HGNC:5031



Transcript annotation


Transcript_name:ENST00000677518.1 ENST00000677847.1 ENST00000679026.1 ENST00000677840.1
Distance:-93
Num_trans:14
All_trans:ENST00000677518.1:-93 ENST00000677847.1:-93 ENST00000679026.1:-93 ENST00000677840.1:-93 ENST00000551679.1:-182 ENST00000678093.1:353 ENST00000679251.1:353 ENST00000678199.1:353 ENST00000676925.1:353 ENST00000677832.1:353 ENST00000677666.1:353 ENST00000677061.1:353 ENST00000677072.1:353 ENST00000676661.1:353



TATA-Box annotation


Distance to TSS:217
Nearest PromoterID:NM_002272
Entrez ID:3851
Nearest Unigene:Hs.654610
Nearest Refseq:NM_002272
Nearest Ensembl:ENSG00000170477
Gene Name:heterogeneous nuclear ribonucleoprotein A1
Gene Alias:CK-4|CK4|CYK4|K4|WSN1
Gene Description:keratin 4
Gene Type:protein-coding
CpG%:0.015
GC%:0.58209
TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation):