Difference between revisions of "TSS:Hg 234464.1"
From referenceTSS
| Line 5: | Line 5: | ||
|IBMPFD3= | |IBMPFD3= | ||
|UP 1= | |UP 1= | ||
| − | |all_trans= | + | |all_trans=CU675707:-69 AB464072:-69 DQ893446:-69 DQ896751:-69 KJ891745:-69 ENST00000553057.5:107 BC069786:-141 U59435:-166 BC072007:-168 BC032111:-169 BC087732:-169 BC011718:-175 BC001951:-188 BC007561:-202 AK291796:-241 ENST00000303305.11:-248 NM_006191:-248 U87954:-256 BC019222:-265 ENST00000552766.5:-270 |
|chr=chr12 | |chr=chr12 | ||
|cpg_percent=0.01 | |cpg_percent=0.01 | ||
| − | |distance=- | + | |distance=-69 |
| − | |distance_to_tss= | + | |distance_to_tss=2079 |
|end=54282814 | |end=54282814 | ||
|end_of_center_position=56104810 | |end_of_center_position=56104810 | ||
|entrez_id=3178 | |entrez_id=3178 | ||
|gc_percent=0.393035 | |gc_percent=0.393035 | ||
| − | |gene_alias=ALS19 | + | |gene_alias=ALS19{{!}}ALS20{{!}}HNRPA1{{!}}HNRPA1L3{{!}}IBMPFD3{{!}}UP 1{{!}}hnRNP A1{{!}}hnRNP-A1 |
|gene_description=heterogeneous nuclear ribonucleoprotein A1 | |gene_description=heterogeneous nuclear ribonucleoprotein A1 | ||
| − | |gene_id= | + | |gene_id=5036 |
| − | |gene_name= | + | |gene_name=proliferation-associated 2G4 |
| − | |gene_source=HGNC: | + | |gene_source=HGNC:8550 |
| − | |gene_symbol= | + | |gene_symbol=PA2G4 |
| − | |gene_synonyms= | + | |gene_synonyms= |
|gene_type=protein-coding | |gene_type=protein-coding | ||
| − | |hgnc_mgi_id=HGNC: | + | |hgnc_mgi_id=HGNC:8550 |
|hnRNP A1= | |hnRNP A1= | ||
|hnRNP-A1= | |hnRNP-A1= | ||
| Line 29: | Line 29: | ||
|nearest_refseq=NM_002136 | |nearest_refseq=NM_002136 | ||
|nearest_unigene=Hs.546261 | |nearest_unigene=Hs.546261 | ||
| − | |num_trans= | + | |num_trans=20 |
|species=human | |species=human | ||
|start=54282796 | |start=54282796 | ||
|start_of_center_position=56104809 | |start_of_center_position=56104809 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name=CU675707 AB464072 DQ893446 DQ896751 KJ891745 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_234464.1 | |tss_id=hg_234464.1 | ||
Revision as of 13:11, 17 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 56104809 |
|---|---|
| End of the center position in the TSS region: | 56104810 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | CU675707 AB464072 DQ893446 DQ896751 KJ891745 |
|---|---|
| Distance: | -69 |
| Num_trans: | 20 |
| All_trans: | CU675707:-69 AB464072:-69 DQ893446:-69 DQ896751:-69 KJ891745:-69 ENST00000553057.5:107 BC069786:-141 U59435:-166 BC072007:-168 BC032111:-169 BC087732:-169 BC011718:-175 BC001951:-188 BC007561:-202 AK291796:-241 ENST00000303305.11:-248 NM_006191:-248 U87954:-256 BC019222:-265 ENST00000552766.5:-270 |
TATA-Box annotation
| Distance to TSS: | 2079 |
|---|---|
| Nearest PromoterID: | NM_002136 |
| Entrez ID: | 3178 |
| Nearest Unigene: | Hs.546261 |
| Nearest Refseq: | NM_002136 |
| Nearest Ensembl: | ENSG00000135486 |
| Gene Name: | proliferation-associated 2G4 |
| Gene Alias: | ALS19|ALS20|HNRPA1|HNRPA1L3|IBMPFD3|UP 1|hnRNP A1|hnRNP-A1 |
| Gene Description: | heterogeneous nuclear ribonucleoprotein A1 |
| Gene Type: | protein-coding |
| CpG%: | 0.01 |
| GC%: | 0.393035 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
