Difference between revisions of "TSS:Hg 234468.1"
From referenceTSS
| Line 5: | Line 5: | ||
|IBMPFD3= | |IBMPFD3= | ||
|UP 1= | |UP 1= | ||
| − | |all_trans= | + | |all_trans=LF317690:-387 MA553267:-387 |
|chr=chr12 | |chr=chr12 | ||
|cpg_percent=0.01 | |cpg_percent=0.01 | ||
| − | |distance=- | + | |distance=-387 |
| − | |distance_to_tss= | + | |distance_to_tss=3208 |
|end=54283937 | |end=54283937 | ||
|end_of_center_position=56159722 | |end_of_center_position=56159722 | ||
|entrez_id=3178 | |entrez_id=3178 | ||
|gc_percent=0.427861 | |gc_percent=0.427861 | ||
| − | |gene_alias=ALS19 | + | |gene_alias=ALS19{{!}}ALS20{{!}}HNRPA1{{!}}HNRPA1L3{{!}}IBMPFD3{{!}}UP 1{{!}}hnRNP A1{{!}}hnRNP-A1 |
|gene_description=heterogeneous nuclear ribonucleoprotein A1 | |gene_description=heterogeneous nuclear ribonucleoprotein A1 | ||
|gene_id=3178 | |gene_id=3178 | ||
| − | |gene_name= | + | |gene_name=HNRNPA1 |
|gene_source=HGNC:5031 | |gene_source=HGNC:5031 | ||
|gene_symbol=HNRNPA1 | |gene_symbol=HNRNPA1 | ||
| Line 34: | Line 34: | ||
|start_of_center_position=56159721 | |start_of_center_position=56159721 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name=LF317690 MA553267 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_234468.1 | |tss_id=hg_234468.1 | ||
Revision as of 13:11, 17 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 56159721 |
|---|---|
| End of the center position in the TSS region: | 56159722 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | LF317690 MA553267 |
|---|---|
| Distance: | -387 |
| Num_trans: | 2 |
| All_trans: | LF317690:-387 MA553267:-387 |
TATA-Box annotation
| Distance to TSS: | 3208 |
|---|---|
| Nearest PromoterID: | NM_002136 |
| Entrez ID: | 3178 |
| Nearest Unigene: | Hs.546261 |
| Nearest Refseq: | NM_002136 |
| Nearest Ensembl: | ENSG00000135486 |
| Gene Name: | HNRNPA1 |
| Gene Alias: | ALS19|ALS20|HNRPA1|HNRPA1L3|IBMPFD3|UP 1|hnRNP A1|hnRNP-A1 |
| Gene Description: | heterogeneous nuclear ribonucleoprotein A1 |
| Gene Type: | protein-coding |
| CpG%: | 0.01 |
| GC%: | 0.427861 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
