Difference between revisions of "TSS:Hg 23476.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=ENST00000295237.10 | + | |all_trans=ENST00000295237.10:-40 AL832452:-40 AL832336:43 AL832011:84 AK092683:-199 CR627255:-303 AK096907:335 BX647645:349 AL831970:368 BX647845:411 AL832360:463 |
|chr=chr2 | |chr=chr2 | ||
|cpg_percent=0.015 | |cpg_percent=0.015 | ||
|distance=-40 | |distance=-40 | ||
| − | |distance_to_tss= | + | |distance_to_tss=61356 |
|end=167248734 | |end=167248734 | ||
|end_of_center_position=167248728 | |end_of_center_position=167248728 | ||
| Line 22: | Line 22: | ||
|nearest_refseq=NM_152381 | |nearest_refseq=NM_152381 | ||
|nearest_unigene=Hs.73680 | |nearest_unigene=Hs.73680 | ||
| − | |num_trans= | + | |num_trans=11 |
|species=human | |species=human | ||
|start=167248721 | |start=167248721 | ||
|start_of_center_position=167248727 | |start_of_center_position=167248727 | ||
|strand=+ | |strand=+ | ||
| − | |tata_box= | + | |tata_box=-43(GCATATAAAAGA,-,0.00) |
| − | |transcript_name=ENST00000295237.10 | + | |transcript_name=ENST00000295237.10 AL832452 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_23476.1 | |tss_id=hg_23476.1 | ||
Revision as of 13:17, 17 June 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 167248727 |
|---|---|
| End of the center position in the TSS region: | 167248728 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000295237.10 AL832452 |
|---|---|
| Distance: | -40 |
| Num_trans: | 11 |
| All_trans: | ENST00000295237.10:-40 AL832452:-40 AL832336:43 AL832011:84 AK092683:-199 CR627255:-303 AK096907:335 BX647645:349 AL831970:368 BX647845:411 AL832360:463 |
TATA-Box annotation
| Distance to TSS: | 61356 |
|---|---|
| Nearest PromoterID: | NM_001199145 |
| Entrez ID: | 129446 |
| Nearest Unigene: | Hs.73680 |
| Nearest Refseq: | NM_152381 |
| Nearest Ensembl: | ENSG00000163092 |
| Gene Name: | xin actin binding repeat containing 2 |
| Gene Alias: | CMYA3 |
| Gene Description: | xin actin binding repeat containing 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.015 |
| GC%: | 0.422886 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -43(GCATATAAAAGA,-,0.00) |
