Difference between revisions of "TSS:Hg 234784.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=ENST00000281589.5:141 NM_030979:141 AL136900:160 AK313336:163 BC045608:167 BC027617:177 AF132026:181 DQ895297:204 DQ892103:204 KJ897288:204 | ||
|chr=chr13 | |chr=chr13 | ||
|cpg_percent=0.03 | |cpg_percent=0.03 | ||
| − | |distance= | + | |distance=141 |
| − | |distance_to_tss= | + | |distance_to_tss=27501 |
|end=110149210 | |end=110149210 | ||
|end_of_center_position=25095995 | |end_of_center_position=25095995 | ||
| − | |entrez_id= | + | |entrez_id=105370361 |
|gc_percent=0.432836 | |gc_percent=0.432836 | ||
|gene_alias=- | |gene_alias=- | ||
| − | |gene_description= | + | |gene_description=uncharacterized LOC105370361 |
| − | | | + | |gene_id=5042 |
| + | |gene_name=poly(A) binding protein cytoplasmic 3 | ||
| + | |gene_source=HGNC:8556 | ||
| + | |gene_symbol=PABPC3 | ||
| + | |gene_synonyms=PABP3 tPABP | ||
|gene_type=ncRNA | |gene_type=ncRNA | ||
| − | |nearest_ensembl= | + | |hgnc_mgi_id=HGNC:8556 |
| − | |nearest_promoter_id= | + | |nearest_ensembl= |
| − | |nearest_refseq= | + | |nearest_promoter_id=NR_148221 |
| − | |nearest_unigene=Hs. | + | |nearest_refseq=NR_148221 |
| − | |num_trans= | + | |nearest_unigene=Hs.134728 |
| + | |num_trans=10 | ||
|species=human | |species=human | ||
|start=110149195 | |start=110149195 | ||
|start_of_center_position=25095994 | |start_of_center_position=25095994 | ||
|strand=- | |strand=- | ||
| − | |tata_box= | + | |tata_box=71(CCTTTTATGTAA,+,0.00) |
| − | |transcript_name= | + | |transcript_name=ENST00000281589.5 NM_030979 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_234784.1 | |tss_id=hg_234784.1 | ||
|tss_score=1 | |tss_score=1 | ||
| + | |uniprot_id=Q5VX58 Q9H361 | ||
}} | }} | ||
Revision as of 13:18, 17 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 25095994 |
|---|---|
| End of the center position in the TSS region: | 25095995 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000281589.5 NM_030979 |
|---|---|
| Distance: | 141 |
| Num_trans: | 10 |
| All_trans: | ENST00000281589.5:141 NM_030979:141 AL136900:160 AK313336:163 BC045608:167 BC027617:177 AF132026:181 DQ895297:204 DQ892103:204 KJ897288:204 |
TATA-Box annotation
| Distance to TSS: | 27501 |
|---|---|
| Nearest PromoterID: | NR_148221 |
| Entrez ID: | 105370361 |
| Nearest Unigene: | Hs.134728 |
| Nearest Refseq: | NR_148221 |
| Nearest Ensembl: | |
| Gene Name: | poly(A) binding protein cytoplasmic 3 |
| Gene Alias: | - |
| Gene Description: | uncharacterized LOC105370361 |
| Gene Type: | ncRNA |
| CpG%: | 0.03 |
| GC%: | 0.432836 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | 71(CCTTTTATGTAA,+,0.00) |
