Difference between revisions of "TSS:Hg 23480.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=AK096907:85 BX647645:99 AL831970:118 AL832011:-146 BX647845:161 AL832336:-187 AL832360:213 AL832382:266 ENST00000295237.10 | + | |all_trans=AK096907:85 BX647645:99 AL831970:118 AL832011:-146 BX647845:161 AL832336:-187 AL832360:213 AL832382:266 ENST00000295237.10:-282 AL832452:-282 AK092683:-441 AL831985:458 |
|chr=chr2 | |chr=chr2 | ||
|cpg_percent=0.005 | |cpg_percent=0.005 | ||
|distance=85 | |distance=85 | ||
| − | |distance_to_tss= | + | |distance_to_tss=61602 |
|end=167248984 | |end=167248984 | ||
|end_of_center_position=167248974 | |end_of_center_position=167248974 | ||
| Line 22: | Line 22: | ||
|nearest_refseq=NM_152381 | |nearest_refseq=NM_152381 | ||
|nearest_unigene=Hs.73680 | |nearest_unigene=Hs.73680 | ||
| − | |num_trans= | + | |num_trans=12 |
|species=human | |species=human | ||
|start=167248963 | |start=167248963 | ||
|start_of_center_position=167248973 | |start_of_center_position=167248973 | ||
|strand=+ | |strand=+ | ||
| − | |tata_box= | + | |tata_box=21(CCTTATATGAGA,+,0.00) |
|transcript_name=AK096907 | |transcript_name=AK096907 | ||
|tss_classification=yes | |tss_classification=yes | ||
Revision as of 13:18, 17 June 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 167248973 |
|---|---|
| End of the center position in the TSS region: | 167248974 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | AK096907 |
|---|---|
| Distance: | 85 |
| Num_trans: | 12 |
| All_trans: | AK096907:85 BX647645:99 AL831970:118 AL832011:-146 BX647845:161 AL832336:-187 AL832360:213 AL832382:266 ENST00000295237.10:-282 AL832452:-282 AK092683:-441 AL831985:458 |
TATA-Box annotation
| Distance to TSS: | 61602 |
|---|---|
| Nearest PromoterID: | NM_001199145 |
| Entrez ID: | 129446 |
| Nearest Unigene: | Hs.73680 |
| Nearest Refseq: | NM_152381 |
| Nearest Ensembl: | ENSG00000163092 |
| Gene Name: | xin actin binding repeat containing 2 |
| Gene Alias: | CMYA3 |
| Gene Description: | xin actin binding repeat containing 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.005 |
| GC%: | 0.348259 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | 21(CCTTATATGAGA,+,0.00) |
