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Difference between revisions of "TSS:Hg 23490.1"

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Line 4: Line 4:
 
|cpg_percent=0.01
 
|cpg_percent=0.01
 
|distance=21
 
|distance=21
|distance_to_tss=62847
+
|distance_to_tss=62758
 
|end=167250131
 
|end=167250131
 
|end_of_center_position=167250130
 
|end_of_center_position=167250130
Line 27: Line 27:
 
|start_of_center_position=167250129
 
|start_of_center_position=167250129
 
|strand=+
 
|strand=+
|tata_box="84(CCTTAAATATAG,+,0.00)"
+
|tata_box=84(CCTTAAATATAG,+,0.00)
 
|transcript_name=BC070143
 
|transcript_name=BC070143
 
|tss_classification=yes
 
|tss_classification=yes

Revision as of 13:21, 17 June 2021

Basic information about the TSS


TSS ID:hg_23490.1
Species:human
Chr:chr2
TSS Classification:yes
Start:167250128
End:167250131
Strand:+
TSS Score:1
Start of the center position in the TSS region:167250129
End of the center position in the TSS region:167250130



Gene and protein annotation


Transcript_name:BC070143
Distance:21
GeneID:129446
HGNC/MGI_ID:HGNC:14303
UniProt_ID:
Gene_name:xin actin binding repeat containing 2
Gene_symbol:XIRP2
Gene_synonyms:
Gene_source:HGNC:14303



Transcript annotation


Transcript_name:BC070143
Distance:21
Num_trans:4
All_trans:BC070143:21 AK056582:-53 BC107799:105 AL832375:-363



TATA-Box annotation


Distance to TSS:62758
Nearest PromoterID:NM_001199145
Entrez ID:129446
Nearest Unigene:Hs.73680
Nearest Refseq:NM_152381
Nearest Ensembl:ENSG00000163092
Gene Name:xin actin binding repeat containing 2
Gene Alias:CMYA3
Gene Description:xin actin binding repeat containing 2
Gene Type:protein-coding
CpG%:0.01
GC%:0.373134
TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation):84(CCTTAAATATAG,+,0.00)